Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4315 ATGGATCAGGCAAGAAGTGAAGACAGTGCTGAGGTGTTGGATAATGTAGTTGGAGAAGGAGTTGCAACTGATGCAGGAGATGGTAGTGAATTGGTTGAGAGAGATGATGTAGTTGGAGAAAATGGAACTTCAGATCTGGGTTTGAATACGGAGCTAGAGGAGGAGGAGGAGACTCGAGTGGTTAAGGATCAGGAAACAGCTGAGTTGCAAAAAATCAGTGATACATTGTGTGGGGTTGAGCAAGGAACTAGTTATAGCTCAAGAAATTTGGTCAGTAGGGAGGATGTACTTGAGACCTGTGTTGTAATAGATCCTCCTGCTCAGATCGAGCATGTCCAGGGAAAATCGAAAGCAAAAGCCAATGAATCAGGGTTGAGCAAGCTAGCCATGAAAGCACCAAAGGCAGTGTCTGAGACAGATAAAAATTCATGTGCAATTGATATAAACAAAGAGTTTAGTGAGAACTTGGAAGGTGAAATGATTTGTAGAATTTGTCATCTGGCATCAGGGCAACCAATAGAAGCAATGATGGTTGGGACTGCTAACAATGAAACTAGTACAGATTTGATTCAACTTGGTTGTGCATGTAAGGATGAGCTAGGCATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCAGAATCACAGGTTATCAATCATTCATTTATGGAAGAGTGGAACGAAAGTAGGTTCATCGACGGTGGTAATAGTACCTCAACCGGCTTCTTTGGAAGATGTTGGCGTGGACAGCCATTCTGTAACTTTTTGATGGCATGCTTGGTAATAGCTTTCGTTCTACCATGGTTCTTCCGTGTAAATATGTTCTAG 882 0.4218 MDQARSEDSAEVLDNVVGEGVATDAGDGSELVERDDVVGENGTSDLGLNTELEEEEETRVVKDQETAELQKISDTLCGVEQGTSYSSRNLVSREDVLETCVVIDPPAQIEHVQGKSKAKANESGLSKLAMKAPKAVSETDKNSCAIDINKEFSENLEGEMICRICHLASGQPIEAMMVGTANNETSTDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSESQVINHSFMEEWNESRFIDGGNSTSTGFFGRCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4315 293 ProSiteProfiles Zinc finger RING-CH-type profile. 154 230 IPR011016 GO:0008270
Ahy3g4315 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 235 IPR013083 -
Ahy3g4315 293 MobiDBLite consensus disorder prediction 1 65 - -
Ahy3g4315 293 SUPERFAMILY RING/U-box 159 226 - -
Ahy3g4315 293 Pfam RING-variant domain 181 223 IPR011016 GO:0008270
Ahy3g4315 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 293 - -
Ahy3g4315 293 PANTHER ZINC FINGER, RING-CH-TYPE 1 293 - -
Ahy3g4315 293 SMART ringv_2 161 224 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4315 Ahy-Chr3 143178328 143180824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4315 157 292 C3H Transcription Factor Family AT5G05830 41.429 1.84e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4315 - - gmx:100791129 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4565 13 146024073 146026675 Ahy3g4315 3 143178328 143180824 hybridization
Ahy3g4315 3 143178328 143180824 Ahy20g0326 20 3424893 3427491 PCT
Ahy3g4315 3 143178328 143180824 Ahy10g0138 10 1352754 1354961 PCT
Ahy20g0326 20 3424893 3427491 Ahy3g4315 3 143178328 143180824 PCT
Ahy10g0138 10 1352754 1354961 Ahy3g4315 3 143178328 143180824 PCT