Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4287 ATGTGTATAAAGTGTGAAGAACAAAAGACCAAAGAGAAAGTGAATATGAAAAACAAGTCAAAGTTTGTTGGGGTGAGGCAAAGAGCTTCTGGAAAATGGGCAGCAGAGATCAAAGATACATCAAAGCAGATAAGGATTTGGCTTGGAACCTATCAAACTGCTGAGGAAGCTGCTAGAGCCTATGATGAAGCAGCTTTTCTCCTTAGAGGTTCCAACACTCGCACCAACTTCAACACTCGTCACACTATTGCTCCCAATTCTCCTATATCTCTCAAAATCAGAAATCTGCTCGATCGTAGAACCATCTCAACTCGAATTCAAAAGCAACTCCCTATGGTTAGTCCCAATGTTCAAGATGCCAAGCAAGAAAACCATGCATGTAGATATAGTGGTAGTAGTGAAGGTGAGTCTTTGTTTTGGGTGCAGAACCAAGTTTCTGACAATGTTTATAGGCCAGAATTGAATATGATGACCTGTGCAACGGGTCCGGTTGAACTAAATGAGTATCAGTTTGATTATTCATGGGCATTAGCTCAACAAAGGATTAATGAATTACCAATATTATCACCAGAAAGTGGATTCAATGAAGAAAGGAAACTGTCAGATTCACTTTTTGCCATGAATGAGGATGACCATGGGAATGAGTATGAGTGTGATGTCAGTTATCCTCTCTCCCACTTGTTCTGCTTTAATTGA 696 0.4009 MCIKCEEQKTKEKVNMKNKSKFVGVRQRASGKWAAEIKDTSKQIRIWLGTYQTAEEAARAYDEAAFLLRGSNTRTNFNTRHTIAPNSPISLKIRNLLDRRTISTRIQKQLPMVSPNVQDAKQENHACRYSGSSEGESLFWVQNQVSDNVYRPELNMMTCATGPVELNEYQFDYSWALAQQRINELPILSPESGFNEERKLSDSLFAMNEDDHGNEYECDVSYPLSHLFCFN* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4287 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 9 184 - -
Ahy3g4287 231 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Ahy3g4287 231 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Ahy3g4287 231 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Ahy3g4287 231 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Ahy3g4287 231 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Ahy3g4287 231 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Ahy3g4287 231 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Ahy3g4287 231 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 184 - -
Ahy3g4287 231 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4287 Ahy-Chr3 142893823 142895570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4287 7 229 AP2-EREBP Transcription Factor Family AT5G19790 40.873 1.37e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy3g4287 AP2 3.00E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4287 K09286 - gmx:100803832 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4539 13 145756524 145758167 Ahy3g4287 3 142893823 142895570 hybridization