LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy3g4252	ATGGAGTGCAAGAGCATCCAGAGCATGGCATCAAGTAGCACAGGACCCAAATATGACGTGTTTGTGAGCTTCAGAGGTGAGGACGTACGCAACACCTTCGCTGATCATCTCTTTGCCGCTTTCCGTAGAAACGGAATAGTTGCATTCAGGGACGATAGGAATCTGATGCAAGGACAGCACATCTCCACTGAGCTGGTGCAAGCAATTGAAGGATCTCAGGTTCTCATTGTCATCTTCTCTAAGAACTATGCTACCTCTTCATGGTGCTTGCAGGAACTCGCTAAGATGCTTGATTGCAGCAATACGATAACAGAACCAAATCTGTTGCCTATTTTCTATGATGTGACTCCGTCTGAGGTGCGTAAACAGACCGGAAACTATGGGAAAGCGTTGGCTGAGCATGAAGAAAGATTCAAACATAACTCAAACATGGTGCAACAATGGAGGGAATCTCTGCTGCAAGTCGCCAATCTCTCTGGTTGGGATATACAAAATAAGCAGGAGAATGGAGAGATTGAAAAGATCGTTAAAAGGGTTAGAAGCAAATTAGGTTGCAACTCGTTAAGTGTGGATGGGTTGGTTGGGATGCAATCTCGTGTGGAAGAATTGGAAAACCTGATTGATTTCAACTCCAATAATGAAGTTCGGGTTGTAGGCGTTTGTGGCATGGGTGGGATAGGAAAGTCAACACTTGCTAAGGTGGTGTATGGTAGAAACCTTCATAAATATGGTGCTCATTGTTTTGTTGACGATATAAGCAAAGTTTTTCGTGGAGGTGGTCTACTTTCACTACAAAAGCAACTTGTTTGTCAAATTACAAATGGAGAGATCCAAGATATATACAATCATTACCAGGCTAAGAGTTTGATAAAAACTATGTTACGCTATCAAAAGGCTCTGATTGTTCTAGATAATGCCGAAGAAGTTGAACAGTTAGAGAAGCTTGGCGTGACTCGTGATTGTGTATGTCCAGGAAGCAGAATTGTAGTAACTTCTAGAGATCAACATGTCTTGGACTCTTTTGGGCTAGATCAAACATACAAAGTTCAACTTTTGAATGAGGATGAAGCTCATCAATTGTTTTGTGAAAAAGCTTTTGATGATAATATAATTATGAGTTGTGACGAGATTAGCAGAGAGTACAAAAAGTTGACGGATCTTGAACTTAAATATGCTCAACGCCTTCCCTTGGCAATTAAAGTTTTGGGGTCATATCTACGCGGTGGAGATATCTCTGTATGGAGAAGTGCCTTAGATAGACTGAAAAATAATCCAAAGAAGGAAATCGCAGATGTGCTTCAACTTAGTTTTGATGGATTGGAACCCCTCGAAAAGGAAATATTTTTGGACATTGCTTGTTTCTTTAACCACGAATGGGTTCGGCGTGTGGAAGACATGTTGTATTGTCGTGGTCTTCATCCAAAGATTGGAATAAGTGTACTCATCGATAAATCATTAATAACAAATGATGGATATTATATTAGAATGCATGACCTGTTGCAAGAGTTAGGCATGAGAATAGTTCGACAGAGTGCTCCAAATGAGCCATGGAAGTGGAGTAGGATATGGCACGAAGAGGATATTCAATGTATTATGTTTGGAAATACGGTAATTGATGATGTTAAGGCCATGCAATTGATGGAACCAGATGAAAAAAGAAATATGACATTTAGAGCAGAAACATTATCAAGAATGAGACTACTTGAATTTCTCAAAATAAAAAGGGTTGGTTTTTCTGGAAGTATTAATAGCATTTCTAGCGAATTGAGATATCTCGAGTGGGACGAATATCCGTTTACGTATTTTCCATCAGGTTGTAAGCTATCCAAGCTTTTGAAATTAATCTTGCGAAGGAGCAACATCAAGCAACTATGGGATGGCACAATGTGTCTGGACAATTTGAAGGAATTGGATCTCTCTGACTCCGAAAATCTTGTGAAGACTCCAAACCTTAGCCAGGCTCCAAATCTTGAGGTGCTGATCCTTAGAGGATGCAGAAAGCTTAAGCACATACATCCATCAATTGGAGACCTAAGAAAGCTTCTTCGGTTAGATTTGAGGGAGTGCACAAGTTTAATGAGTTTTCCCATCACTGTATTCGGTATATCTTCACTAAAAGAGGTTAATCTGAGCGGGTGCTCAAGATTATTTGGTGGGACAGAGTTGGAGAATGGAAGTGAGAGTGGTATCCAATGTCAATCGACAATATGGTCCACTTTTAAAAGGCTTAAGCTTAGGTTACCATTCCATTTCTTCAATTCTTCTAAAAGTAGATACAACCGTGTGTTCCATCTGTGGAGGCTTTCTGTGGCTCGCTTAAGCTGCGTGTATTATCTTGACCTAAGTTGTTGTAATCTGCATACTATCCCTGAGGCCATATCATCCTTACATTATTTAGAGATCTTAGTTTTTTGGGGAAACAATATAGTTAGAGTACCTGATTTCATAAATAAGCTTCCCAGACTGAGAGTGTTGGACTTAGATAACTGCAAACGGCTAATGTATGTAGATGAGTTCCCATTACCGTTACACTATCCAGCGGCAGAGCTAACAAAACTTGCGAAATGGAGAGAATTGAGGATGTGGAACTGCCCGAAAATAGTAGAGAAGGAAAGGTTGAGTGGAATGGAAAGTTCATGGATGAGAGAGTACATTAAGGTACACAATGAATCCACTGATAAACTTGCTATTGTAATTCCAGGAGGTGGAGTTCCAATTCCAAGGTGGTTTAAGGATCAGAATAAGGGGGCGGATAATTCAATGTGGATAGAATCATTTCTGAATGCCAATGACAACAATTGGATTGGCATTGCCCTTTGTGCCCAGTTTGTCGTTCAATTTGCACCATTCCTCTTCATTGAGCTCTCCTTTTACGACCAAACAGGAAAAGCCAATCTCAATCACCTTGTTGTTTCGCTTCGAAACGAGGAGGAGGTGAGGGGTGAATTGGTTCACTTCTGCCTATTCTATTTTTCTCGCCAACAACTCATTCGGGATGGAAAGCAGCATGATCTTCATGGATCCCGCTTTGAATTCAAAGAAGTTAACCACCGCTATGTGGAAGTGAAGAAGTGGGGAATGCGTGTGATACTGGACCAGGATATGGAGTAA	3111	0.4063	MECKSIQSMASSSTGPKYDVFVSFRGEDVRNTFADHLFAAFRRNGIVAFRDDRNLMQGQHISTELVQAIEGSQVLIVIFSKNYATSSWCLQELAKMLDCSNTITEPNLLPIFYDVTPSEVRKQTGNYGKALAEHEERFKHNSNMVQQWRESLLQVANLSGWDIQNKQENGEIEKIVKRVRSKLGCNSLSVDGLVGMQSRVEELENLIDFNSNNEVRVVGVCGMGGIGKSTLAKVVYGRNLHKYGAHCFVDDISKVFRGGGLLSLQKQLVCQITNGEIQDIYNHYQAKSLIKTMLRYQKALIVLDNAEEVEQLEKLGVTRDCVCPGSRIVVTSRDQHVLDSFGLDQTYKVQLLNEDEAHQLFCEKAFDDNIIMSCDEISREYKKLTDLELKYAQRLPLAIKVLGSYLRGGDISVWRSALDRLKNNPKKEIADVLQLSFDGLEPLEKEIFLDIACFFNHEWVRRVEDMLYCRGLHPKIGISVLIDKSLITNDGYYIRMHDLLQELGMRIVRQSAPNEPWKWSRIWHEEDIQCIMFGNTVIDDVKAMQLMEPDEKRNMTFRAETLSRMRLLEFLKIKRVGFSGSINSISSELRYLEWDEYPFTYFPSGCKLSKLLKLILRRSNIKQLWDGTMCLDNLKELDLSDSENLVKTPNLSQAPNLEVLILRGCRKLKHIHPSIGDLRKLLRLDLRECTSLMSFPITVFGISSLKEVNLSGCSRLFGGTELENGSESGIQCQSTIWSTFKRLKLRLPFHFFNSSKSRYNRVFHLWRLSVARLSCVYYLDLSCCNLHTIPEAISSLHYLEILVFWGNNIVRVPDFINKLPRLRVLDLDNCKRLMYVDEFPLPLHYPAAELTKLAKWRELRMWNCPKIVEKERLSGMESSWMREYIKVHNESTDKLAIVIPGGGVPIPRWFKDQNKGADNSMWIESFLNANDNNWIGIALCAQFVVQFAPFLFIELSFYDQTGKANLNHLVVSLRNEEEVRGELVHFCLFYFSRQQLIRDGKQHDLHGSRFEFKEVNHRYVEVKKWGMRVILDQDME*	1037

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy3g4252	1036	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	451	IPR027417	-
	Ahy3g4252	1036	SUPERFAMILY	Toll/Interleukin receptor TIR domain	11	161	IPR035897	-
	Ahy3g4252	1036	Pfam	NB-ARC domain	200	427	IPR002182	GO:0043531
	Ahy3g4252	1036	Pfam	TIR domain	17	182	IPR000157	GO:0007165
	Ahy3g4252	1036	Gene3D	Ribonuclease Inhibitor	734	878	IPR032675	-
	Ahy3g4252	1036	Gene3D	Ribonuclease Inhibitor	552	729	IPR032675	-
	Ahy3g4252	1036	Gene3D	-	2	156	IPR035897	-
	Ahy3g4252	1036	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	184	1035	IPR044974	GO:0006952
	Ahy3g4252	1036	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	184	1035	-	-
	Ahy3g4252	1036	SUPERFAMILY	L domain-like	558	865	-	-
	Ahy3g4252	1036	SMART	till_3	17	158	IPR000157	GO:0007165
	Ahy3g4252	1036	Gene3D	-	351	441	IPR042197	-
	Ahy3g4252	1036	Gene3D	-	167	350	IPR027417	-
	Ahy3g4252	1036	ProSiteProfiles	TIR domain profile.	16	183	IPR000157	GO:0007165
	Ahy3g4252	1036	PRINTS	Disease resistance protein signature	817	833	-	-
	Ahy3g4252	1036	PRINTS	Disease resistance protein signature	217	232	-	-
	Ahy3g4252	1036	PRINTS	Disease resistance protein signature	293	307	-	-
	Ahy3g4252	1036	PRINTS	Disease resistance protein signature	392	406	-	-
	Ahy3g4252	1036	SUPERFAMILY	"Winged helix" DNA-binding domain	428	528	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy3g4252	Ahy-Chr3	142575244	142579724	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy3g4252	13	804	WRKY Transcription Factor Family	AT4G12020	27.784	4.76e-65	239

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy3g4252	-		-	ahf:112792657	1776.91