Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4249 ATGGCAGGACAAAGTTCTGATGCTTGTCCTTCTGAGTCCTCTAGCATCTCTGGCACCTCCCAAGGGATTGATAACAACACAAGGGACAATGATCTAGCTTCTGAACCGGACCAAGCCTCAAATTCCAATAATAATATGGAAAGGATGTTGGATTTTGTGAAGCTCTCCAACAATGATGTTTCATCGATTCGTTGTTCTTCCAACGTGAAAGAGCTCGATTTTTTCAACACCGGGAAGAGGGTGATGGGATCATCGTCAACTTGGACTAATAATAATGTTGACGAAGGAAAAGATGAAAACACTGAAGAAAAAGAAAGGACTTCAGAGCCGAAAACTTTCTCTTGCAATTTTTGCAAGAGAGAGTTCTCGTCCTCTCAAGCCCTTGGCGGGCACCAAAATGCCCACAAACAAGAGCGTGCGATAGCGAAACGTCGCCAAGGGATGGACACGGGTGCTTTTGGTCACCCTCACTTTCCATATTACCCTTACCATAGCTTTTCCACACCATCTTTATATGGGTCCTATAATAGGACACTTGGGGTAAGAGTCGAATCCATGATTCACAAACCTTCTTATCCTTGGTCTGCTGCTCTTAGGTTTGGTCGTAATCATAATTGGTCAACGCAGGGGATTCTTGGTTCATCATCATCATTAACACTTGATAGGTTAAGTATTGAGGGTTTGCAACCAAATAATGAAGTAGGCGGGGTTAGTGGAATTCAAGCAAGTTCTTCAAATTTGAGAAAAGAAGATGATAATGGTGGTAATGGAACTACTTCCCAACTAGGAGATTCTTCTACCGACAATGTTGCTACAAGTCTCACTCGCCATGCAAAGGATGATCCCAAGCCAGATAATGAACCCTCTAGTTCTGAGTCTCCGGGGCTTGATTTGTCACTTAAGCTTTAA 909 0.4312 MAGQSSDACPSESSSISGTSQGIDNNTRDNDLASEPDQASNSNNNMERMLDFVKLSNNDVSSIRCSSNVKELDFFNTGKRVMGSSSTWTNNNVDEGKDENTEEKERTSEPKTFSCNFCKREFSSSQALGGHQNAHKQERAIAKRRQGMDTGAFGHPHFPYYPYHSFSTPSLYGSYNRTLGVRVESMIHKPSYPWSAALRFGRNHNWSTQGILGSSSSLTLDRLSIEGLQPNNEVGGVSGIQASSSNLRKEDDNGGNGTTSQLGDSSTDNVATSLTRHAKDDPKPDNEPSSSESPGLDLSLKL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4249 302 MobiDBLite consensus disorder prediction 234 273 - -
Ahy3g4249 302 MobiDBLite consensus disorder prediction 1 46 - -
Ahy3g4249 302 SUPERFAMILY beta-beta-alpha zinc fingers 110 140 IPR036236 -
Ahy3g4249 302 MobiDBLite consensus disorder prediction 83 108 - -
Ahy3g4249 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Ahy3g4249 302 PANTHER ZINC FINGER PROTEIN JAGGED 5 302 IPR045320 GO:0003700
Ahy3g4249 302 Gene3D Classic Zinc Finger 90 152 - -
Ahy3g4249 302 MobiDBLite consensus disorder prediction 229 302 - -
Ahy3g4249 302 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 5 302 - -
Ahy3g4249 302 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4249 Ahy-Chr3 142543466 142544374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4249 107 191 C2H2 Transcription Factor Family AT5G10970 56.818 1.40e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy3g4249 None None None