Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4210 ATGCAGGTTGTTCGATCTCATCAGAGTCACAGGAGCTTCTCCTCCTCCAGTGGCTCCGTTTCAGCTTCTCCGACCCTTCCCCTTTATCGCTCCGCTCCAGAGCTCGAAGTCAGGCTAGAAGATTTCGAATCTTTTGCCATCGATCGTCTACGAGTTCTCAAGGGGATATCTGATGGCTTGTCAAGGGGAAAGAAACCGGACGAAATGGAAAAATTGGTAAATGAGCTGTGGAAAACAAATATGAGACATCAAGATTCGTCTCAGGTTCTGAACAAGGATATTATATCTCATTTTGTTCTCCGTCTTGTGTATTGCAGAACGGAGGAATTGAGGAAATGGTTTCTTTCTATGGAATCTGCACTCTTTCGCCACCGATTTCGTAATCAAACTGCTGAAGCTCAGCGGGCCATCATGGAAGAATTTGACCTTCCTTGCAAGGCTGTAAGCAATGCAGAATTTGAGAGCTTGAAAGAGAAATTGGGACAAGTTGCACGTTCTATTGGTCATAACCTGTCTTTATCCACTACGGATGCAATCTACTATAAGGTACCATTTGAAGAAGTTCCAGAGCTTGTAACTGGACGGAAAGTATTTATAAATCAGGGATATGCATACGTTGCAATGAATCAGGTTGTTTCACTTGTAGCCACAATTTTTCGTAGTCTTCTGTCAAAGGCACTCATCCTAACAAACAGAAAATGGGCAACTTCAATTAGAGAACAAGAACAACATAGGTTGACTCCTATTGTGGAGGCCCTGTGTTCGAGCTATTTGGGTCCTGATTTTTCTCAGCCTAAAGAATATGGCGAGATATCATTAAAGGACATCGATCAGGTTGCCAAGAGCTCATTTCCTTTGTGCATGCGTCACCTATTTGAAAAGCTGAGAGAGGATCATCATTTAAAGCATGCAGGGAGGATGCAACTAGGCTTATTTCTGAAGGGTGTTGGCCTGAACGTAGATGATTCACTTGCATTTTGGAGAGAGGAGTTCTCTAAAAAGGTTGGTCTGGAGAAGTTTGAGAAAGAATATGCATACAACATACGCCATAATTATGGGAAAGAAGGGAAGAAAACTGATTATACTCCATATTCTTGTCAAAAGATTATTTTATCAACTCCTGGTGTTGGAGATCATCATGGTTGCCCTTATCGACATTTTGGCGAGGAGAATCTAAGAGCTGCTCTCAGTAGAATGGGGGTTAATAGTCGGGCAATGGAAGATGTGATGGGCAAAGTGAGAAATAGAGATTATCAGTTGGCCTGCACCTTGACATTTGAAGCTCTTCATGCGGCGCCATGTGATGCAGGGATTAACCATCCAAATCAATACTTCAGTGACAGTCAAAGGCTATTAAAGGCAAAGAAGGACTCTTCAACGTAA 1383 0.4252 MQVVRSHQSHRSFSSSSGSVSASPTLPLYRSAPELEVRLEDFESFAIDRLRVLKGISDGLSRGKKPDEMEKLVNELWKTNMRHQDSSQVLNKDIISHFVLRLVYCRTEELRKWFLSMESALFRHRFRNQTAEAQRAIMEEFDLPCKAVSNAEFESLKEKLGQVARSIGHNLSLSTTDAIYYKVPFEEVPELVTGRKVFINQGYAYVAMNQVVSLVATIFRSLLSKALILTNRKWATSIREQEQHRLTPIVEALCSSYLGPDFSQPKEYGEISLKDIDQVAKSSFPLCMRHLFEKLREDHHLKHAGRMQLGLFLKGVGLNVDDSLAFWREEFSKKVGLEKFEKEYAYNIRHNYGKEGKKTDYTPYSCQKIILSTPGVGDHHGCPYRHFGEENLRAALSRMGVNSRAMEDVMGKVRNRDYQLACTLTFEALHAAPCDAGINHPNQYFSDSQRLLKAKKDSST* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4210 460 Pfam Eukaryotic and archaeal DNA primase, large subunit 180 445 IPR007238 GO:0006269
Ahy3g4210 460 Gene3D - 1 253 - -
Ahy3g4210 460 PIRSF DNA_primase_large 1 460 IPR016558 -
Ahy3g4210 460 PANTHER DNA PRIMASE LARGE SUBUNIT 1 456 IPR007238 GO:0006269
Ahy3g4210 460 PANTHER DNA PRIMASE LARGE SUBUNIT 1 456 - -
Ahy3g4210 460 CDD PriL_PriS_Eukaryotic 28 448 IPR016558 -
Ahy3g4210 460 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4210 Ahy-Chr3 142085556 142092144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4210 1 459 Core DNA Replication Machinery Family AT1G67320 65.517 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4210 K02685 - gmx:100816023 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4494 13 145156821 145163560 Ahy3g4210 3 142085556 142092144 hybridization