Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4209 ATGGGAAGGGGAAGGGTAGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAACGGGCTACTGAAGAAGGCGTATGAGCTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACACTAGAGAGGTACCAGAAATGTAACTATGGAGCACCGGAAACTAATGTGTCAACTAGGGAAGCCTTGGAATTAAGCAGTCAACAAGAATACTTGAAGCTGAAGGCACGTTATGAAGCCCTACAAAGGTCCCAGAGAAACCTGATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTGGAGTCACTGGAAAGGCAGCTAGATTCGTCGTTGAAGCTAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTATCGGAACTTCAACGTAAGGAACACTTGCTAAGTGAGGCTAACAGGGCTCTCAGACAAAGGTTGGAAGGGTATCAAATAAATCCAATGCAGCTGAATCCTGGTGGTGTTGATGATATGGGATATGCCCGCCATCCACCTCAACCTCAGCCCGATCCTCTTTTCCAGCAATTGGATTGTGAGCCTACCTTACAAATTGGATATCAGCCTGATCCAGTATCAGTGGTGACGGCAGGCCCAAGCATGGGCAATTACATGGGAGGATGGCTACCATAG 729 0.4678 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKLIRSTRTQFMLDQLSELQRKEHLLSEANRALRQRLEGYQINPMQLNPGGVDDMGYARHPPQPQPDPLFQQLDCEPTLQIGYQPDPVSVVTAGPSMGNYMGGWLP* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4209 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy3g4209 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Ahy3g4209 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy3g4209 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Ahy3g4209 242 Coils Coil 126 146 - -
Ahy3g4209 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy3g4209 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ahy3g4209 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy3g4209 242 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy3g4209 242 Coils Coil 152 172 - -
Ahy3g4209 242 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Ahy3g4209 242 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Ahy3g4209 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy3g4209 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy3g4209 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy3g4209 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4209 Ahy-Chr3 142066461 142069941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4209 1 242 MADS-box Gene Family AT1G24260 72.764 8.64e-114 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy3g4209 K-box 2.90E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4209 - - gmx:100805078 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4493 13 145134569 145138106 Ahy3g4209 3 142066461 142069941 hybridization