Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4200 ATGATTTTCTTCTTTTGGTTTCTTCTTCTTCTTCATCCTCATATCTGTGTGTCCTTTTTTGGTTTATCATTTTTTTCTTCGGAAAACAAAAATGCCAAGAAAAACAAGCTAGGTTTTCATGAAATTTGCATTCACTCCTCCATTCTCCCTCTCTTTCTTTCTCTGCTCATTGAGCTTCACTCACTGCTTTTTTCAGGATCACTGAATTTCTCAGCTCTTCCGATGGAGTGGAATGCAAAATCTCCCTCACAATGGGAGTGGGAGCACCTGTTCTTCTCCAATGCAAAAGTAACCGAAAACCCCAAATTACAACCACCACCAGATTGGAGTGGTGAAGCAAATGGAGAAACCAATGTTGGGTTGTTGGACAATTCTGGTGGTAGTGGTTGCTCTGAGTCTGAGCTCATGAACCCATCTTCATCAAGAAGCTCGAAATCTGCTTCCATCAATTCATCTTCCAATAGGGATAGCAAAACATCTATCTTCACCTTAGAAAGTTCCCAAGATGATTCCAGTGGTAAAAAAGAAGAGCTGGTTGAAAACTCTCATTCGCATGAGGCCCCTCCTGGCTCTGGCGAACCGTTGCTTACTCTAAAGCTTGGTAAACGCTTGTATTTTGAGGATGTTTGTCCGGGAAGTGATGCCAAGAAGAACCAGTCTTCCTCGGGTGCTCCGATTCAAGCTGTGAGTAGTGGAAAGAAATCTAAGTCCAATGCTCAGAACATGCAATATCCATGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTCTTGTCAGCTAAAGATTATCATCGCAAACATAGAGTTTGTGAAAATCATTCCAAATCTCCAAAGGTGGTTATTGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGAAAACAAAAGAAGCTGCAGACGGCGTCTTTCAGATCACAATGCACGGCGCCGGAAACCTCATCCTGAAACTGTCCAGTTAAATCCATCAGATTTGACTCCGTCGCCTTTTGCAGTTGGGAGGCAACAGATTAGCCCCTTCACTTATACAACGAGCGGAGCCGCGAATACAGTTTGGCAAGACATGCGGCGGAGCAAGCAGCTCCCCCAGACGAAAGATTTTCTGTTGAAGGCTGTGAAAGGCAACAATGAGATACCAAGTATTGTGAGCATGGTCACAGAGGATAATTCCAAAGGTGTAGAGGATTCAACTACGTGCTCTGATACTCAAGATTTCCAGAGTGCTCTCTCTCTTCTGTCAACCGAGTCTCATCAGCCTCAGCGCTTGCCTATTGCTTCCTCAGAATACTGGCACACTGATCAACACCCATTGGCTTCCACCATGTGGCTCACCTACCCAACTTGCGACGACACCATCACCAACCGCTCTCAGGAATTTCAGCTCTTACGAGAACCTTATGATTCTGCTTTTAGTTATCACCACTTGGATTAA 1455 0.4474 MIFFFWFLLLLHPHICVSFFGLSFFSSENKNAKKNKLGFHEICIHSSILPLFLSLLIELHSLLFSGSLNFSALPMEWNAKSPSQWEWEHLFFSNAKVTENPKLQPPPDWSGEANGETNVGLLDNSGGSGCSESELMNPSSSRSSKSASINSSSNRDSKTSIFTLESSQDDSSGKKEELVENSHSHEAPPGSGEPLLTLKLGKRLYFEDVCPGSDAKKNQSSSGAPIQAVSSGKKSKSNAQNMQYPCCQVEGCGLDLLSAKDYHRKHRVCENHSKSPKVVIAGLERRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPHPETVQLNPSDLTPSPFAVGRQQISPFTYTTSGAANTVWQDMRRSKQLPQTKDFLLKAVKGNNEIPSIVSMVTEDNSKGVEDSTTCSDTQDFQSALSLLSTESHQPQRLPIASSEYWHTDQHPLASTMWLTYPTCDDTITNRSQEFQLLREPYDSAFSYHHLD* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4200 484 MobiDBLite consensus disorder prediction 117 168 - -
Ahy3g4200 484 MobiDBLite consensus disorder prediction 214 237 - -
Ahy3g4200 484 MobiDBLite consensus disorder prediction 169 183 - -
Ahy3g4200 484 Pfam SBP domain 247 320 IPR004333 GO:0003677
Ahy3g4200 484 ProSiteProfiles Zinc finger SBP-type profile. 244 321 IPR004333 GO:0003677
Ahy3g4200 484 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 95 426 - -
Ahy3g4200 484 MobiDBLite consensus disorder prediction 213 237 - -
Ahy3g4200 484 SUPERFAMILY SBT domain 245 326 IPR036893 GO:0003677|GO:0005634
Ahy3g4200 484 Gene3D - 237 308 IPR036893 GO:0003677|GO:0005634
Ahy3g4200 484 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 95 426 IPR044817 GO:0003677
Ahy3g4200 484 MobiDBLite consensus disorder prediction 102 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4200 Ahy-Chr3 141993695 141997074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4200 75 323 SBP-box Gene Family AT5G43270 49.213 2.38e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy3g4200 SBP 3.60E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4200 - - ahf:112792599 947.192