Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4182 ATGGATTCGATGGCAACACTTCCAATAGTGCAATATGAAGAAAAGATCATTGAAACTGTTGAGCGCAATCCCGTCGTTGTTGTCATCGGAGAAACCGGTTCCGGAAAGAGCACCCAGCTCTCTCAGATGCTCTACCGCCGCGGCTACGCCGATTCCGCCAGAATCGCCATCACTCAGCCCCGCCGTGTCGCTGCGGTCACCGTCGCAAGGCGCGTTGCGCAGGAGCTTGGCGTTCAGCTTGGAGAGGAAGTTGGATATGCCATTCGATTCGAGGATAGAACTTCACACCGCACGCGCATAAAATATCTTACCGACGGGGTTCTGCTCCGCGAGAGTCTGGTGAATCCTGAGCTGAATGAGTATTCTGTCATCATATTGGACGAAGCTCATGAACGGAGCTTGAACACGGATATATTGATGGGGCTGATGAAACGCTTGGCTAAAATTCGTACTTCCAATCTCAAAGTCTTGATCACATCGGCCACTCTTGATGGTGATAAAGTTTCAAATTTCTTTAGGGACTGTCCTGTGTTGACCATCCCAGGAAAACTGTACCCGGTTGAGATACTTTATAGCAAGGAGCGTCCGTCAAGCTATCTTGAGTCTTCTCTGAAAACGGCTATTGATATACATGTTCGTGAACCGGAAGGGGATGTCTTGATATTCATGACTGGACAGGATGATATAGAGAAATTGGTATCTAAGTTAGAAGATAAAGTTCGGTCTTTGGAGGAAGGTTCTTGCATGGATGCTATAATCCTCCCCCTACATGGTTCCTTGCCACCTGAATTGCAGGTGCGTGTATTTAGTCCCCCACCTCCAAGCTGTAGGCGAATTATTGTTGCAACAAACATTGCTGAAACTTCTTTGACTGTTGACGGTGTTGTGTATGTTATTGACTCTGGGTATGTAAAGCAAAGGCAGTATAATCCATCTACCGGCATGTATTCTCTTGATATTGTTCAAATTAGCAAAGTGCAAGCAAATCAGCGTGCAGGCCGAGCAGGACGAACCCGTCCTGGAAAATGCTACCGTCTGTATCCTTCCCAAGTTTACAATGATGAGTTCTTGGATGTTACTGTTCCCGAAATACAGAGATCTTCTCTTGCTGGTAGTGTTCTTTACTTGAAGTCATTGGACCTTCCAGATATTGACATCCTGAAATTTGATTTTCTTGATCCTCCTTCATCTGAGTCCTTACAAGATGCCTTGAAGCAATTATATCTGATTGATGCTATTGATGAAAATGGTGCAATTACAAGTATTGGACAGAAAATGGCTGAGCTTCCATTAGAACCTTCCTTATCACGAACCTTGATGGAGGCAAATGATTATGGTTGCATACCTGAGGCTTTGACTGTTGCTGCCATGTTATCAGCTGAAACTACATTGCTACCAGGCGGAGAAAAGAGGAAACACCCAGAGCCCAACCTTCCTGATGGCTTTGGCTTGGGTGATCACATACAATTGCTGCAGATATTTGAGTGCTGGGATCAAACTGATTATGACATTGGTTGGTGCAAAGACAATGGCTTACAGGTGCGAGGGATGCTGTTTGTTAGAGATGTCCGTAAGCAGTTATCTCAGATAATGCAGAAAATAGCAAAAGGACCACTCGATAGGAGAAGGGGAGAGTCTCGACAGGATTATCGAAATTTGAGGAAGGCTCTATGTGTGGGATATGCAAATCAGCTGGCTGAAAGGAAAATGCATCACAATGGTTATCGAACTTTGGGTTTTCAAGGCCAAGTAGTCCAGGTACATCCATCGTCTGTTCTGAAAGCTGATGATCTGGGGAAGTTTCCAGACTATGTTGTGTACCATGAGCTAATTGCAACTCCACGTCCATACATGAGAAATGTATGTTCTGTTGAGATGAGATGGGTTGTACCTGTTATTAACAAGCTTAAGACACTGTATACAACTAAGAACAATGATTTGGCTTGTGTAATCATCGTTGTTAAAGGGCAATACTACACAATTTCATGTCCATTTCTGACAAGTGCGATTTCGAATTTGATTCAGACAATCGTTTCTTTCTTGTTATTCATTTGTGGCTACTCTAAAGTCATTATCTCACAAACGGCAATACTTACGATGCAGGCTATTACTGCAGATTCTATTCTTCTAAAATTTGAGAGGGCTAAATGTTCTCTCAAAGATGGTCTTAAACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGAGATCTCAGGACGATTGA 2229 0.4374 MDSMATLPIVQYEEKIIETVERNPVVVVIGETGSGKSTQLSQMLYRRGYADSARIAITQPRRVAAVTVARRVAQELGVQLGEEVGYAIRFEDRTSHRTRIKYLTDGVLLRESLVNPELNEYSVIILDEAHERSLNTDILMGLMKRLAKIRTSNLKVLITSATLDGDKVSNFFRDCPVLTIPGKLYPVEILYSKERPSSYLESSLKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKVRSLEEGSCMDAIILPLHGSLPPELQVRVFSPPPPSCRRIIVATNIAETSLTVDGVVYVIDSGYVKQRQYNPSTGMYSLDIVQISKVQANQRAGRAGRTRPGKCYRLYPSQVYNDEFLDVTVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSSESLQDALKQLYLIDAIDENGAITSIGQKMAELPLEPSLSRTLMEANDYGCIPEALTVAAMLSAETTLLPGGEKRKHPEPNLPDGFGLGDHIQLLQIFECWDQTDYDIGWCKDNGLQVRGMLFVRDVRKQLSQIMQKIAKGPLDRRRGESRQDYRNLRKALCVGYANQLAERKMHHNGYRTLGFQGQVVQVHPSSVLKADDLGKFPDYVVYHELIATPRPYMRNVCSVEMRWVVPVINKLKTLYTTKNNDLACVIIVVKGQYYTISCPFLTSAISNLIQTIVSFLLFICGYSKVIISQTAILTMQAITADSILLKFERAKCSLKDGLKRVEDIVPQSIGCQRSQDD* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4182 742 CDD SF2_C_RHA 185 347 - -
Ahy3g4182 742 Coils Coil 226 246 - -
Ahy3g4182 742 Pfam Helicase associated domain (HA2) 403 472 IPR007502 GO:0004386
Ahy3g4182 742 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 17 181 IPR014001 -
Ahy3g4182 742 PANTHER OS06G0343100 PROTEIN 5 632 - -
Ahy3g4182 742 Pfam DEAD/DEAH box helicase 14 169 IPR011545 GO:0003676|GO:0005524
Ahy3g4182 742 Pfam Helicase conserved C-terminal domain 211 338 IPR001650 -
Ahy3g4182 742 PANTHER ATP-DEPENDENT RNA HELICASE 5 632 - -
Ahy3g4182 742 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 203 380 IPR001650 -
Ahy3g4182 742 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 122 131 IPR002464 -
Ahy3g4182 742 Gene3D - 1 183 IPR027417 -
Ahy3g4182 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 535 IPR027417 -
Ahy3g4182 742 Gene3D - 386 536 - -
Ahy3g4182 742 SMART ha2_5 402 491 IPR007502 GO:0004386
Ahy3g4182 742 SMART ultradead3 5 190 IPR014001 -
Ahy3g4182 742 Gene3D - 184 359 IPR027417 -
Ahy3g4182 742 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 553 633 IPR011709 -
Ahy3g4182 742 SMART helicmild6 230 339 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4182 Ahy-Chr3 141754286 141765323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4182 702 737 U-box Gene Family AT1G67530 75.000 6.95e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4182 K12818 - gmx:100793583 1136.71