Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4154 ATGAAGCTTTCTTCAGCTGATTTTTGTCCTCCACCCCAGGAAGGAGAAAAGCGCGTTTTGGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCAATTGTTGGAAGCCGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCAACCAACAGGGAAGTGGATGCCCAAATTCCTAACTATCCAAGCTTGCCTCCCCAACTTATCTGTCAACTTCATAATGTGACTATGCATGCTGATATTGAGACAGATGAAGTATATGCACAAATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTCCAAGTAAACAGCCTACAAACTACTTTTGCAAAACTTTGACAGCCAGTGACACAAGCACGCATGGAGGGTTCTCTGTTCCTCGCCGTGCAGCTGAAAAAGTGTTTCCTCCTTTGGACTTCACCCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGCGGCCAACCCAAAAGGCATCTATTGACAACGGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGCCGTGCTAATCGGCCACAACCTGTGATGCCTTCCTCAGTTTTGTCTAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACTAATAGTCGATTCACCATTTTCTATAACCCACGTGCTTGCCCATCAGACTTTGTCATACCCTTGGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTCTCAGTTGGCATGCGCTTCAGAATGCTGTTTGAAACAGAGGAATCTAGTGTGCGGCGATACATGGGCACCATAACTGGTATTAGTGACTTGGATCCTGTTCGATGGCAAAATTCACATTGGCGTTCGGTCAAGGTTGGCTGGGATGAGTCCACTGCTGGAGAGAAGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCCTTAACAACATTTCCTATGTATCCATCTCCATTCCCTCTTAGGCTTAAAAGACCATGGCCTTCAGGACTTCCTTCTTTCTATGGCATGAAGGAGGATGATTTTGGCATAAATTCTTCACTAATGTGGCTTAGAGATGCTGATAGAGGGCTCCAGTCTCTTAATTTTCAGGGTACCGGTGTTAGTCCTTGGATGCAACCAAGGCTTGATCCCTCCATGTTGAATTTGCAAACAGATCTGTACCAAGCTATGGCTGCCGCTGCGCTTCAGGATATGAGGACTTTAGACCCTACCAAACAGCATCCCACTTCCTTAATTCAGTTTCAGCAACCCCAGAACTTCCCTAACCGGACGGGTGGTTTAATGCAGACACCAATGTTGCAGCCCTCTCAACATCAGCAGGCCTTCCCAAATAATCAAGAAATTCAGCATCCATCTCAATCTCAGGTTCAAATTCAAAATCATCTTCAGCAGCATCTACAGAATCAGCACTTATTCAACAATCAGAGTCATCAGCAGCAGCAACTACATCAACCACAGCAGCAGCAGCAACCACAGCTTCAACAGCAGCAGCAGCAACAACAACAAATAGTAGATCATCAGCAGATTCCAAATGTGGTCTCTACAATGTCTCAGTTCGTTTTGACTCCGCAGTCTCAGTCGTTACCCATGCAGGCTATCTCTTCACTGTGCCATCAGCAAAGTTTTACTGATTCAAATGGTACTGCTGCTGTTTCTCCGCTACACAGTATCTTGGGTTCATTTCCCCAGGATGAAACATCCCACCTTGTCAACCTTGCTAGAACTTCCTCTTGGGTTCCTGTTCAATCTTCATCTGCATGGCCCTCAAAGCGTGTTGCAGTGGATCCTCTTGTTTCTTCTGAAGCTTCTCAATGTGTTCTGCCTCAGGTGGATCAGTTGGGGCAGGCACATAGCACCATGTCTCAGAATGCTATTTCGTTGCCACCAGTTCCTGGTAGGGAGTACAGTGTAGAAGGGAGCACTGATCCACAAAACCATATTTTGTTTGGTGTGAATATAGAAAACTCTTCTTCGCTACTAATGCATCATGGAATGTCAAGCCTTAAGGGGGTTGGCAGCAACACTCATTCATCAACCGTACCTATTCAATCTTCTAATTACCTGAATACAGTAGGCACTGATTCTTCACTGAATCAAGGAATGACACACAGCAATGGTGAATCGGGCTTCCTTCAGACTCCAGAAGATGGGGGCCGAGGAAACCCGCCAAATAAAAAGACCTTTGTGAAGGTTTATAAATCAGGGACCTTTGGAAGATCATTGGATATAACTAGATTTACCAACTACCATGAGCTGCGCAGCGAGCTTGCTCGTATGTTCGGCCTTGAAGGTGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTAGTTGTGGACCGAGAGAATGACGTTCTTCTCCTCGGTGATGACCCATGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCGGGAGGTGCAGCAAATGGCCAACAATGGCATCTGTGATGACTTACCAGGACATGATGACCCAAGAAATTTAGACTTCTGA 2658 0.4586 MKLSSADFCPPPQEGEKRVLDSELWHACAGPLVSLPIVGSRVVYFPQGHSEQVAVSTNREVDAQIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSDFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFYGMKEDDFGINSSLMWLRDADRGLQSLNFQGTGVSPWMQPRLDPSMLNLQTDLYQAMAAAALQDMRTLDPTKQHPTSLIQFQQPQNFPNRTGGLMQTPMLQPSQHQQAFPNNQEIQHPSQSQVQIQNHLQQHLQNQHLFNNQSHQQQQLHQPQQQQQPQLQQQQQQQQQIVDHQQIPNVVSTMSQFVLTPQSQSLPMQAISSLCHQQSFTDSNGTAAVSPLHSILGSFPQDETSHLVNLARTSSWVPVQSSSAWPSKRVAVDPLVSSEASQCVLPQVDQLGQAHSTMSQNAISLPPVPGREYSVEGSTDPQNHILFGVNIENSSSLLMHHGMSSLKGVGSNTHSSTVPIQSSNYLNTVGTDSSLNQGMTHSNGESGFLQTPEDGGRGNPPNKKTFVKVYKSGTFGRSLDITRFTNYHELRSELARMFGLEGELEDPLRSGWQLVVVDRENDVLLLGDDPWPEFVNSVWCIKILSPREVQQMANNGICDDLPGHDDPRNLDF* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4154 885 PANTHER AUXIN RESPONSE FACTOR 1 870 - -
Ahy3g4154 885 SMART B3_2 127 229 IPR003340 GO:0003677
Ahy3g4154 885 Gene3D - 774 866 - -
Ahy3g4154 885 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Ahy3g4154 885 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 870 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy3g4154 885 SUPERFAMILY CAD & PB1 domains 773 852 - -
Ahy3g4154 885 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Ahy3g4154 885 MobiDBLite consensus disorder prediction 752 775 - -
Ahy3g4154 885 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy3g4154 885 Gene3D - 291 363 - -
Ahy3g4154 885 MobiDBLite consensus disorder prediction 464 510 - -
Ahy3g4154 885 CDD B3_DNA 126 227 IPR003340 GO:0003677
Ahy3g4154 885 Gene3D - 125 228 IPR015300 -
Ahy3g4154 885 MobiDBLite consensus disorder prediction 525 552 - -
Ahy3g4154 885 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Ahy3g4154 885 Pfam AUX/IAA family 774 866 IPR033389 -
Ahy3g4154 885 ProSiteProfiles PB1 domain profile. 777 861 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4154 Ahy-Chr3 141379617 141385525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4154 1 483 B3 DNA Binding Superfamily AT1G30330 84.631 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy3g4154 AUX_IAA 1.50E-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4154 - - gmx:100777789 1420.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4429 13 144310332 144316265 Ahy3g4154 3 141379617 141385525 hybridization
Ahy20g1137 20 19100940 19107258 Ahy3g4154 3 141379617 141385525 PCT
Ahy10g0841 10 11986334 11992643 Ahy3g4154 3 141379617 141385525 PCT