Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4144 ATGGAAAAAGATCTTCAGAGAGGTTTATCGCAAAATCAAGATAACGACGAAACGGGAGAAAGGACCACCGATGCTCCCAACCGAGAGAGGATCATACTAGTGAACCCCTTCACACAAAGCATGGTTGTCATCGACGGCGCTTCAAGCCTCGAAGCTCTGTTTCGCGACATGGCCGTTAACAACAGCAGCAAAGCCGGAAGACCTCCAGCTACGAAGGAATCCATTGACGCCATGCCGAGCTTTGTAATCAAAGAAGCTGAAGTTGAAGTAGGAGAGTGTGTTGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAGGAGATGCCATGTAAGCACAGGTTTCATCCGAATTGCATTGAGAAGTGGCTTGGGATGCATGGAACTTGCCCTGTTTGTATGTACGAGATGCCGGTTGAGGAAAAAGATGAAGGAAAGAAGAGGGATAGTGAAGGAGAAGAAGAACAAGAAGGAGGAGAAAGAGAGAGGAGAAAGACAGCGGCGAAGAATCTAGAGTTTTAG 522 0.4693 MEKDLQRGLSQNQDNDETGERTTDAPNRERIILVNPFTQSMVVIDGASSLEALFRDMAVNNSSKAGRPPATKESIDAMPSFVIKEAEVEVGECVVCLEDFGVGALVKEMPCKHRFHPNCIEKWLGMHGTCPVCMYEMPVEEKDEGKKRDSEGEEEQEGGERERRKTAAKNLEF* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4144 173 MobiDBLite consensus disorder prediction 140 173 - -
Ahy3g4144 173 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 13 157 - -
Ahy3g4144 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 157 - -
Ahy3g4144 173 CDD RING-H2_PA-TM-RING 92 134 - -
Ahy3g4144 173 ProSiteProfiles Zinc finger RING-type profile. 93 133 IPR001841 -
Ahy3g4144 173 Pfam Ring finger domain 92 133 IPR001841 -
Ahy3g4144 173 SMART ring_2 93 133 IPR001841 -
Ahy3g4144 173 SUPERFAMILY RING/U-box 75 138 - -
Ahy3g4144 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 140 IPR013083 -
Ahy3g4144 173 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4144 Ahy-Chr3 141284291 141286968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4144 10 149 C3H Transcription Factor Family AT1G26800 55.714 1.57e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4144 - - ahf:112783997 338.191