LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy3g4107	ATGATTGGAGGTAAGGAACTTCGTAATGGTGGTGTTGACTCTGCGGATGAAAGCTCAAGAAGCAAGCTCACAAGGCCGAATTTTGAGCCCAGCAGGGAGTACCCGGATAAGAAAGGTGTTGAATTTCTGAGAGATTCAGAGATGGGTGGTGTTCACTCAAAGCCCACAAGCAGCAGCATGGTTGGTGGTGCCAGCTCAGGATTGCAAGAACTCACCCTCAGCTACCTCTGTGATGCACAAGGGCTGGGTCTTGCTGCTGATAAGGATATTCCTATTCCTGGTAAGAGCTTATTGCTGAATAATCATTCTTTAGAAAAAGTTGTTAGCCACAAGGGCAAAGAGATTCTTGTTTCCGAGAATTCAAATCATCTTGATGGTGGTAAATTTGTTGAAAGAGATTTCTTGAGCCTGAGTGATACCAGAGAGAATAACTCCTCAAAGCGATCGGTTGAGGAAGAAGAAGAGGAGCAAGAGAGTAATAGGGAGAAGAAGCCAAGGCTTGAGACACTGAATCTCTCTCTTGCTTTGCCTGATGTCTCACTCTCTCTCACCGCTTCAAACGCCTTACAAAACGGTGCTGATCAGCAACAACCACAACCGCTTCGGCCTAAACCTACCAGGCCCTCAACTACAACATGGTCTAATAATGATTGCACAGCAACAGCTTCTTTGTCTTACTCTTACTCTCACCCTTTCTCACACAACCCAAGTTGCTCGCTTACCCGCAATTCAACTGATAATTTTGACTACTCTGTGAGTAAGGATGACCAAATTTGGAATTGTGGGGAGGGGACTAACGGTTCTGTTCACAGTAGGTTCAAGCCAATTGGAGATGGGGTTGGGTTTTCCAATCATGGTGGTGGTATTAGCTCCTTTATGCAGGGAAATAGCCAGTTTAAGACTACTAGTTCGGATAATCATTCCTTTTTCCCTTCTGAATTGCCTGCCAGACCAAGATTTGAAGCTCAATCTGGGGACTCGAGGGGTAGGAATTCCGAGAATGTGAGAATCTTGGAAGGGTTAGATGGTGGGGGGAAGATGAAGAAGCTCTCAAGGCCTGAGAGGATCCTGAGGGAAGTTGTTTCTGAGTCTGTTCCCGCCGCAGCACTGATGATTCAGGAGCTTGCTGATGAAGTCATAGCTTCAACCAAGGAATACCTGAAGAATCTCATTGAGAAGCCTGACAAGAAAGATGAATTGGTCAGCCTACAAAGCAGGCTTGAAAGAAGATCTGACCTCTCCAAAGAGACTCTTTCCAAGTGCCATAAGGTGCAGTTGGAGATTCTGGTTTCTGTCAAGATGGGGCTTGCAAGCTTCTTATATGGTAAAATTCAATTATCTGAGATGGTAGAGGTTTTCTTATATAGGAGATGTAGGAATGTTAACTGCAAGAGTCTGCTTCCTGTTGATGACTGTGACTGCAAGATTTGCTCAGGGAATAAGGGATTTTGTAGTTCGTGTATGTGTCCTATTTGTTTGAACTTCGATTGCGCAAGCAATACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCCCATTGGTGCCATGCTGTCTGTGGCATTCAGAGGAACCTCATCAAGCCCGGTCCGAGCTTGAAGGGACCTGCGGGGACCTCAGAAATGCAGTTTCATTGTATTGGCTGTGGACATGCTTCTGAAATGTTTGGGTTTGTTAAGGATGTGTTCATGTGTTGTGCAAAGGATTGGGGACTTGAAACCTTGATGAAGGAGCTCGACTGTGTGAGGAAGATTTTTAGGGGAAGTGAAGACCGTAAAGGGAAAGAATTGCATGTCAAAACTGATGACATGCTGTTAAAGCTTCAAACTAAAATGGCTTCTCCTTCGGATGCCTGCAATTATATCACACAATTTTTCAACTATGCAGATAACTTGCCAGACTTTCCCCTTTCTGCCATATCTGCAAAGGATATAGCATCATCTCAATCCAACATTACGAAAGACACACCATCTCTTCCAAAAACTAGTTCCTTAATGCCTAAATATGCTTATGACATGAGCTATTCTAGGCCACATTCTGGTGCCTTGCCAAATGATCTTCATCAAAAGGACTTCAAAGCTTCCATATTAAGTGAACTAAAAACTGAGGCTGATTTCCAACTGGGGGCTTTGCTAAGGAAAGGTGGACTTGACAGCTTGGAGAGCATTGTGCGGATAAAGGAGGCGGAAGCGAAAATGTTTCAGACGAAGGCGGATGAAGCAAGGAGGGAGGCAGAAGGGTTCCAGAAGATGATCAGGACAAAGACCGCACAGATGGAAGAAGAGTATGCCGAAAAGCTAGCCAAACTGTGTTTGCATGAGACTGAGGAAATGAGGAGGAAGAAACTAGAAGAACTCAAAGTCTTGGAAGGTTCCCATTATGATTACTATAAGATGAAGAAGAGAATGCAAGATGAGATAGATGGTTTATTGGAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA	2463	0.443	MIGGKELRNGGVDSADESSRSKLTRPNFEPSREYPDKKGVEFLRDSEMGGVHSKPTSSSMVGGASSGLQELTLSYLCDAQGLGLAADKDIPIPGKSLLLNNHSLEKVVSHKGKEILVSENSNHLDGGKFVERDFLSLSDTRENNSSKRSVEEEEEEQESNREKKPRLETLNLSLALPDVSLSLTASNALQNGADQQQPQPLRPKPTRPSTTTWSNNDCTATASLSYSYSHPFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVGFSNHGGGISSFMQGNSQFKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENVRILEGLDGGGKMKKLSRPERILREVVSESVPAAALMIQELADEVIASTKEYLKNLIEKPDKKDELVSLQSRLERRSDLSKETLSKCHKVQLEILVSVKMGLASFLYGKIQLSEMVEVFLYRRCRNVNCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWVGCDVCSHWCHAVCGIQRNLIKPGPSLKGPAGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLMKELDCVRKIFRGSEDRKGKELHVKTDDMLLKLQTKMASPSDACNYITQFFNYADNLPDFPLSAISAKDIASSQSNITKDTPSLPKTSSLMPKYAYDMSYSRPHSGALPNDLHQKDFKASILSELKTEADFQLGALLRKGGLDSLESIVRIKEAEAKMFQTKADEARREAEGFQKMIRTKTAQMEEEYAEKLAKLCLHETEEMRRKKLEELKVLEGSHYDYYKMKKRMQDEIDGLLERMEATKQQWV*	821

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy3g4107	820	MobiDBLite	consensus disorder prediction	136	167	-	-
	Ahy3g4107	820	MobiDBLite	consensus disorder prediction	297	332	-	-
	Ahy3g4107	820	Coils	Coil	722	756	-	-
	Ahy3g4107	820	MobiDBLite	consensus disorder prediction	191	215	-	-
	Ahy3g4107	820	Pfam	Coiled-coil region of Oberon	688	809	IPR032535	-
	Ahy3g4107	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	410	425	IPR004082	-
	Ahy3g4107	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	371	393	IPR004082	-
	Ahy3g4107	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	495	515	IPR004082	-
	Ahy3g4107	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	568	587	IPR004082	-
	Ahy3g4107	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	716	736	IPR004082	-
	Ahy3g4107	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	449	470	IPR004082	-
	Ahy3g4107	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	755	777	IPR004082	-
	Ahy3g4107	820	MobiDBLite	consensus disorder prediction	10	48	-	-
	Ahy3g4107	820	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	1	820	IPR004082	-
	Ahy3g4107	820	Coils	Coil	798	818	-	-
	Ahy3g4107	820	MobiDBLite	consensus disorder prediction	1	64	-	-
	Ahy3g4107	820	Pfam	PHD - plant homeodomain finger protein	458	582	IPR032881	-
	Ahy3g4107	820	CDD	PHD_OBE1_like	488	547	-	-
	Ahy3g4107	820	PANTHER	PROTEIN OBERON 3	1	820	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy3g4107	Ahy-Chr3	140583551	140586823	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy3g4107	458	587	PHD Gene Family	AT5G57380	26.718	2.87e-08	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy3g4107	-		-	gmx:100820216	1272.3