Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4067 ATGGTTGCTCAACACCCTCAGCCTCAGCCTCAGCCACAGCCACAGCCACAGCCACAGCCACAGCAACCTCCTTCGTCTGCACAAGACGAGGCTTTGAAGAGGAACACCGATTGCGTCTACTTTCTCGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCTCGGGTAAATCCTAGAGATTGCTGGTATTGGTTGAATGGAAATTGCTTGAACCCCAAATGTGCTTTCCGTCATCCGCCACTTGATGGCTTGTTAGGTTCACCGGCAGCCACTGCTGCTGGGCCATCTGTTCCCTCGTCACAGATTGCAGCGACACCTGCAGCACCTGCAGGGCCTTATAATTCTACTAAACAAGCTGTCCCTTGTATTTTCTTTCAGAAGGGTCTTTGCTTAAAAGGTGACAGATGTGCTTTCTTGCATGGACCAAATCCTACTGCTGGTAACAAAGCTGTTAATCAGGTCCCAGTGTCTAACCAGGGAACTGAGACTCCAAATCTTAAGAAGCCATTTGGCAGCAGAGATAAAAATGCACAAGAAAGGAGAAGCTCCCAAGGAAACATTCCAAAATTAGTTGGAGGTCTTGAAATTAAACCTTCCCCAAAGGTCGAAACTGCTCCACAAAGAAATAATTTTGAATTGCTGAAGGAGAAGCATGTGGCACCACCACCTGCAGGATTTGATGATGAGGCTTCAAGATTTAAAATGAGAAGTATTTCCCCAGTGGCTAACGGGCCTACTGCTGCCCGTTCAAATCGACTGCATCAAGTCCGTATGCCAGATGATAATAGTTTCCACAATGGTAAGGACAGTGATGAATTCCTCAGAGAATCCTCTCCTGGATTTGATGTTCTTGTAGCTGACGAGCTTAGAAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAATGCAAGAGGTCCAGATGAAAGGAACTTGGACTCTTTGAATGATTATGACTTGGGGCATTCTGCTGATTATGGTTTAGCGCGTGATATTGATCAAGAAAGATTTCGTGTTCCTCAATCCTACGACTCATATGATCACATGCAGGAGCCATACGCTTGGGAGCAGCATAGAAAGGCCCCAGGCCATTTAGAAAGAAGGTCTCACCGCAGATCTGATAGTCCTGACAATGTAGAGGTCTCAGATCTCCGACATCGTTTATCTAAGCGCAGGAGGGTTAACGGTTTGAAATCTGTTGTCTCTAATGACTTTGACAGCCATGGTGATCAACAAAGTCACCACTCTAGGAAGGATTCGCATCAGTTACCTTTGAATGATCGCTTCCGAGGCAGAATAAAACTTCCAGCAAGTGGTGCCGACGATAACCCAGAGAGGGAATCAGACAGAGGAAGAATTAGGAGCAGATTATCAACTGGAAGGTTGCCAACCCCGCACCAAGGAAGGCTCCAAGACAGAATTAGAGGAAGGGTGCAGGATGATGAGAGGAGAAATTTCAGGGAACGATCAATAGGGAGAGAAGTAATGGGGGACAGAAGTGATTTTTCCGGACCCAAAAGCCTTGCTGAACTTAAGAATGGGAGGAGCTCTGATTATAAGGAGCATCAATCACTGGGAAAGAGGAAGAGTCTAAGGGAACAGTCACAATCAGAAGGTGATTTTCAGTTTGATGGTCCAAAACCTCTGAGTGAAATTCTGAAGGAGAAGAGAAGAGTTGGAGCTGGTGTATCCTCACAGAGTGAAATTGTTCATAGCTCTGATGATACAGCTGTCACAAACATGCAAAATGGAGCATTGCCTGAGGCCAAGGAAGGTGCCAAGAACCACTCACTAATTAATGAAGAAGAAACCAAGCTTCAGGACACTGATACAGCTGGAAGGGAGATAGATAATAATGAGGGGAATCGTGATCAGTCGTATGAGGATGGAATGATCTATGATGAAGCCGCAGAGGAACAGGAGTATGAAGGCGATGATCAGAGGGATGGAGAGTATGATTATGAGCAAGTTGACGAGGGGGAATATGATTATGAACAAGTTGATGAGGGAGAAAATCCAGAGCAAGAATACATGGAGGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTGATGACTACATAA 2112 0.4531 MVAQHPQPQPQPQPQPQPQPQQPPSSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCAFRHPPLDGLLGSPAATAAGPSVPSSQIAATPAAPAGPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPTAGNKAVNQVPVSNQGTETPNLKKPFGSRDKNAQERRSSQGNIPKLVGGLEIKPSPKVETAPQRNNFELLKEKHVAPPPAGFDDEASRFKMRSISPVANGPTAARSNRLHQVRMPDDNSFHNGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGNARGPDERNLDSLNDYDLGHSADYGLARDIDQERFRVPQSYDSYDHMQEPYAWEQHRKAPGHLERRSHRRSDSPDNVEVSDLRHRLSKRRRVNGLKSVVSNDFDSHGDQQSHHSRKDSHQLPLNDRFRGRIKLPASGADDNPERESDRGRIRSRLSTGRLPTPHQGRLQDRIRGRVQDDERRNFRERSIGREVMGDRSDFSGPKSLAELKNGRSSDYKEHQSLGKRKSLREQSQSEGDFQFDGPKPLSEILKEKRRVGAGVSSQSEIVHSSDDTAVTNMQNGALPEAKEGAKNHSLINEEETKLQDTDTAGREIDNNEGNRDQSYEDGMIYDEAAEEQEYEGDDQRDGEYDYEQVDEGEYDYEQVDEGENPEQEYMEDEDGDDFAKKIGVMTT* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4067 703 MobiDBLite consensus disorder prediction 1 30 - -
Ahy3g4067 703 SUPERFAMILY CCCH zinc finger 125 149 IPR036855 GO:0046872
Ahy3g4067 703 MobiDBLite consensus disorder prediction 476 508 - -
Ahy3g4067 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 150 IPR000571 GO:0046872
Ahy3g4067 703 MobiDBLite consensus disorder prediction 157 174 - -
Ahy3g4067 703 Pfam Zinc-finger containing family 33 87 IPR041686 -
Ahy3g4067 703 MobiDBLite consensus disorder prediction 7 23 - -
Ahy3g4067 703 Gene3D - 24 89 - -
Ahy3g4067 703 Gene3D - 120 183 - -
Ahy3g4067 703 MobiDBLite consensus disorder prediction 416 436 - -
Ahy3g4067 703 MobiDBLite consensus disorder prediction 447 464 - -
Ahy3g4067 703 MobiDBLite consensus disorder prediction 639 689 - -
Ahy3g4067 703 ProSiteProfiles Zinc finger C3H1-type profile. 32 61 IPR000571 GO:0046872
Ahy3g4067 703 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 17 702 - -
Ahy3g4067 703 MobiDBLite consensus disorder prediction 602 638 - -
Ahy3g4067 703 ProSiteProfiles Zinc finger C3H1-type profile. 63 89 IPR000571 GO:0046872
Ahy3g4067 703 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 17 702 - -
Ahy3g4067 703 MobiDBLite consensus disorder prediction 573 591 - -
Ahy3g4067 703 SMART c3hfinal6 65 88 IPR000571 GO:0046872
Ahy3g4067 703 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Ahy3g4067 703 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Ahy3g4067 703 MobiDBLite consensus disorder prediction 521 543 - -
Ahy3g4067 703 MobiDBLite consensus disorder prediction 367 703 - -
Ahy3g4067 703 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Ahy3g4067 703 MobiDBLite consensus disorder prediction 157 210 - -
Ahy3g4067 703 MobiDBLite consensus disorder prediction 367 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4067 Ahy-Chr3 140140294 140144094 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy3g4067 zf-CCCH_3 7.70E-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4067 - - gmx:100787836 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4346 13 143136204 143139991 Ahy3g4067 3 140140294 140144094 hybridization