Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4042 ATGGCTTCCTTCACAGTTGGTCCTCATCATCGCCATTTGTCACATGACTCTGATGAGGTTCGCCCTCCTACTCGACAATCTGCTTCATCGAAAGTACAATGCCGAGTTTGTGGTGATGAGATTGGATATAAGGAAGATGGAGGGTTATTTGTGGCATGTTATGTGTGTGGCTTCCCTGTTTGTCGACCCTGCTATGAGTATGAGAGAAGTGAAGGCACACAGTGCTGTCCTCAGTGCAACACTCGCTATAAGCGTCACAAAGGATCTCCTAGAGTAGTAGGAGATGAAGAGGAGAACTTTGATGCAGATGATTTTGATGATGAATTTCAGATTAAGACTGGCCATGATCATGATGATGTTAATCATGCGGAAGATAAAGACAAGAAGGAACAGCAGTGGCATCCCAATGCTCAAGCTTTTTCTTCAGCAGGAAGTGTTACCGGCAAGGACATTGAAGGGGACAAAGAATTCTACAGCAATGCAGAGTGGGAAGAAAGGGTAGAGAAATGGAAAGCCAGACAAGAAAAGAAAGGCCTCCTAAACAAAGAAGAAGGAAAAGACGATCAAGATGAAGAAGAAGATGAGTACCTTTTGGCTGAAGCTAGACAACCATTGTGGCGTAAAGTTCCAATATCTTCAAGCCTGATCAACCCATACCGGATAGTGATTGTGATGAGGCTGGTGATTCTGGCTTTCTTCTTGCACTTCCGCATCATGACTCCAGCACATGATGCTTTCCCACTGTGGTTAACATCTGTGATATGTGAGACATGGTTTGCATTCTCATGGATCCTTGACCAGTTCCCTAAATGGTTCCCCATCACGCGCGAGACTTACTTGGACCGCTTGTCCATAAGGTTCGAGCGCGAAGGGGAACCAAACAAGCTTTCCCCTGTTGATGTCTTTGTCAGTACTGTGGACCCTTTGAAGGAACCTCCAATCATAACAGCCAACACCGTCCTTTCCATCCTCTCCGTCGATTACCCGGTCGAAAAGGTTTCCTGCTATGTATCAGATGATGGTGCTTCTATGCTTCTCTTTGACACACTCTCTGAAACCTCTGAGTTTGCAAGAAGATGGGTTCCATTTTGCAAGAAGCATAATATTGAGCCAAGAGCTCCTGAGTTCTATTTCTCTCAGAAAATCGATTACTTGAAAGACAAGGTACATCCTATGTTTGTCAAGGAACGCAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTGAAGATTAATTCTTTGGTGGCAAAGGCTCAGAAGAAACCAGAGGAAGGTTGGGTGATGCAGGATGGAACACCATGGCCTGGGAATAACACTCGTGATCATCCAGGAATGATTCAGGTGTATTTGGGAAGTGCTGGTGCACTTGACGTGGAAGGCAAGGAACTGCCGCGACTTGTGTATATTTCGCGTGAAAAACGTCCTGGCTATCAACACCACAAAAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCTTTCATGTTGAATTTGGATTGTGACCACTACATCAACAATAGCAAGGCTATAAGAGAAGCTATGTGCTTCTTAATGGATCCTCAGCTTGGGAAGAAGCTCTGCTATGTCCAATTCCCACAAAGGTTCGATGGTATTGATCGACATGATAGATATGCCAATCGCAACATTGTATTCTTCGATATCAATATGAAAGGCCTAGATGGGATCCAAGGTCCAGTGTATGTTGGTACTGGAACTGTTTTCAATAGGCAGGCATTGTACGGATATGATCCACCGGTGTCCGAGAAAAGGCCGAAGATGACGTGTGATTGTTGGCCTTCCTGGTGCTGCTGCTGTTGTGGTGGTTCAAGGAAATCAAAGTCAAAGAAGAAATCAGGTGGAGGAGGTCTTTTCAGTAAATTGTACAAGAAGAAAAAGATGAAGGGGAAGAACTATGTTAGAAAAGGGTCTGAGCTGATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTTTGATGAGCTAGAGAAATCATCTCTAATGTCTCAGAAACAGTTTGAGAAGCGATTCGGGCAGTCGCCTGTTTTCATTGCTTCCACTTTGATGGAGAATGGTGGACTTCCTGAAGGCACCAATTCTCAAAATCTTATAAAGGAGGCCATTCATGTTATAAGTTGTGGCTATGAAGACAAAACGGAATGGGGAAAAGAGATTGGGTGGATTTATGGCTCAGTGACAGAAGATATCTTAACAGGGTTCAAAATGCACTGTAGAGGGTGGAAATCAGTGTACTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCACCAATAAATCTATCAGATAGGTTGCACCAAGTTTTGAGATGGGCTCTTGGTTCTGTTGAAATTTGCCTTAGTCGCCATTGTCCCCTGTGGTATGGTTATGGAGGAAAGCTTAAGTGGCTAGAAAGGATGGCTTATACCAACACCATAGTATATCCATTCACTTCCATTCCTCTCCTTGCATATTGCATACTACCAGCTGTGTGTCTTCTTACTGGAAAATTCATCATTCCCACCTTGACAAACCTTGCTAGTGTTTGGTTCATGGCTTTATTTATATCCATCATCCTAACCGGTGTCCTTGAGCTTCGGTGGAGTGGAGTTAGCATCGAAGATTGGTGGCGAAACGAGCAATTTTGGGTGATTGGAGGAGTTTCGGCACACCTTTTTGCTGTGTTCCAAGGCCTCCTGAAAGTTCTTGGAGGAGTAGACACCAACTTCACAGTTACAGCAAAAGCAGCAGATGATACTGAGTTCGGAGAGTTATACCTTTTCAAGTGGACAACACTTCTGATCCCACCAACCACCCTCATAATATTGAACATGGTTGGGGTTGTGGCTGGTGTCTCTGATGCCATTAACAATGGATATGGCACATGGGGACCTTTATTTGGGAAGCTATTCTTTGCATTTTGGGTTATTGTTCACTTATATCCTTTCCTAAAGGGTCTCATGGGAAAGCAAAACAGGACTCCAACCATTGTGGTTTTATGGTCAATTCTGCTAGCATCCATTTTCTCATTGATTTGGGTGAGGATCGATCCATTCTTGCCTAAGCAAACTGGTCCAATACTCAAGCAGTGTGGAGTTGAATGCTAA 3126 0.4402 MASFTVGPHHRHLSHDSDEVRPPTRQSASSKVQCRVCGDEIGYKEDGGLFVACYVCGFPVCRPCYEYERSEGTQCCPQCNTRYKRHKGSPRVVGDEEENFDADDFDDEFQIKTGHDHDDVNHAEDKDKKEQQWHPNAQAFSSAGSVTGKDIEGDKEFYSNAEWEERVEKWKARQEKKGLLNKEEGKDDQDEEEDEYLLAEARQPLWRKVPISSSLINPYRIVIVMRLVILAFFLHFRIMTPAHDAFPLWLTSVICETWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNKLSPVDVFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVHPMFVKERRAMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKSGGGGLFSKLYKKKKMKGKNYVRKGSELMFDLEEIEEGLEGFDELEKSSLMSQKQFEKRFGQSPVFIASTLMENGGLPEGTNSQNLIKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEICLSRHCPLWYGYGGKLKWLERMAYTNTIVYPFTSIPLLAYCILPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGTWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4042 1041 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 413 591 IPR029044 -
Ahy3g4042 1041 SUPERFAMILY Nucleotide-diphospho-sugar transferases 312 832 IPR029044 -
Ahy3g4042 1041 CDD mRING-HC-C4C4_CesA_plant 34 82 - -
Ahy3g4042 1041 Pfam Zinc-binding RING-finger 31 99 IPR027934 -
Ahy3g4042 1041 Pfam Cellulose synthase 299 1034 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ahy3g4042 1041 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 23 123 - -
Ahy3g4042 1041 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 23 123 - -
Ahy3g4042 1041 SUPERFAMILY RING/U-box 28 100 - -
Ahy3g4042 1041 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 157 1041 - -
Ahy3g4042 1041 MobiDBLite consensus disorder prediction 113 148 - -
Ahy3g4042 1041 MobiDBLite consensus disorder prediction 113 133 - -
Ahy3g4042 1041 Coils Coil 397 417 - -
Ahy3g4042 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Ahy3g4042 1041 MobiDBLite consensus disorder prediction 1 26 - -
Ahy3g4042 1041 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 157 1041 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4042 Ahy-Chr3 139783176 139788163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4042 2 1041 Cell Wall Biosynthesis AT5G17420 66.075 0.0 1428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4042 K10999 - gmx:100781996 1805.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4313 13 142725854 142730605 Ahy3g4042 3 139783176 139788163 hybridization