Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4009 ATGGAATTCACCTCTTTTTTATGTGAAATCAATTCCATTGAATACCCAACAGTACCACAAGACTTCTATTTTTCTAATTTCTTCTCCATCATGTTCAGTCTCACCAAAGAATTGATCCAAATTGACTTTTCTTCTTCTACAATTACTACTCTCAATGAAGCGTTCTTGGTTCCCTTCGATGTCCTGCGTAACGGAGAAGACACTGCATTCTTACATGAAATATTCTCTTCAATGCCTATATCTCCTCAGATATTAGACCAAATTTTACTTTTTATGGGCAGAACTGCAAGAACAATTCTAAGCCGTGAAGGGTGTGAGTCCAGCATGTCAGAGATTGTTGTGAACCTTTATGTTGTTGTTATCCAAGATTCTGATTTCTATAATGATGATGTCCGTCAAGATGTTCCTGAACTAGTCCGACTTGTGAATCTGTTGGAGAGATCCAAAATTGATGAGCAAGATGATGATGCTGAACAATGCAGTATTTGCTTGGAAGAGTTTGGACATGGTATCCAAGATTCAAGTGTAAAAGTTGTTCGCACAAAGTGCTCGCATGTGTTCCATGAAAGCTGCATGCTCCGTTGGCTGCGGCATTGTGCCGACCATCAATCACCCTATTTTTGCCCATTGTGCCGCTGCATCATATTTCCAACTTCGCAGAGAGATGAATAG 672 0.3988 MEFTSFLCEINSIEYPTVPQDFYFSNFFSIMFSLTKELIQIDFSSSTITTLNEAFLVPFDVLRNGEDTAFLHEIFSSMPISPQILDQILLFMGRTARTILSREGCESSMSEIVVNLYVVVIQDSDFYNDDVRQDVPELVRLVNLLERSKIDEQDDDAEQCSICLEEFGHGIQDSSVKVVRTKCSHVFHESCMLRWLRHCADHQSPYFCPLCRCIIFPTSQRDE* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4009 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 216 IPR013083 -
Ahy3g4009 223 SUPERFAMILY RING/U-box 159 217 - -
Ahy3g4009 223 SMART ring_2 160 211 IPR001841 -
Ahy3g4009 223 ProSiteProfiles Zinc finger RING-type profile. 160 212 IPR001841 -
Ahy3g4009 223 Pfam Ring finger domain 159 212 IPR001841 -
Ahy3g4009 223 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 144 213 - -
Ahy3g4009 223 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 144 213 - -
Ahy3g4009 223 CDD RING-H2 160 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4009 Ahy-Chr3 139331990 139332661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4009 144 216 C3H Transcription Factor Family AT4G12190 38.158 1.10e-08 48.9