Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3996 ATGAGAAGGGTTACACAGTCAAACAAAATCCAGGCCACTATAAGGAAGCAACTTATCAACAGGTTTAAAGATAATATTATTGAAGGGAATTGCTACAAGATGTGCTATTTCTCTGTTGTTCCAAATCATGGCTCTTATAGAGCTACAAAACATGAGTTTAAGCTTACCTTCCTCTTCCGAACAATAGTAACAACTTTACCAGATGATATCATACCAAGAGTCTGTTTTACTCTATATCCTTTTGAGGAGATATTGCAAATGAGTCAAGATCATGATTATTTAGTTGATGTTATTGGGTTGCTGACTTTAGTTGGAGAGGAAAAAAGTTATGATAAAGATGGAAAAACAATCAAGATGGTTGTTGTGGAGCTTTCTTCTCAAAAGATGGTGCTTAGGTGCGCCCTGTTTGGAGAATATGTGGATCAACTAAATCATTTTCTTTCTTCTGGTTATGTTGAACAACCAGTAGTGATTCTTCAACTTGCCAAAGTTAAGCTTTTTCGAGGGCAACCTGGGTTACAAAATGTCATGAAAGCAACAAAAATATATCTTAATCCTGACTTGGCAGCTGTTTTTGATTTCAGGAAGAGCGTGGTAGAGCAAGGGATAAATGGGACCCAGCCACTGTTTATTGCTAATGAAGGAAAAACTATCTCATTGGAAGATGACTTCATGAGGTTGACTAAGAAATCTACAATAGATGAGTTGCAAGAAAACAAGGAGGATGGAACCTTTGTCATTTTAGGTACTATCACTGATGTTGTAGAAGAGGGGTGCTGGTGGTATTCTACCTGTGTTTGTGGGAAGACAGTACATCCTGAATCTGGTGTTTACTTTTGTGATATGTGCATGCATCATGTGACAAATGTGATCCCAAGGTATAGGCTCAAGGTAGTTGTATCAGATGAAACTGGACAGGGTATATTTGTCCTCTTTGATCGTGAAACAACCTATTTGGTTAAAAAAACATGTGGTGACCTATTTAATGAGGTACATAAAGATTCAAAGGTTCTCTGTGGGGATGACTACCCTATCATTTTTAGAAATTTGGAGGGTAAAAAAGTCTTGCTGAAAGTGGATACTAAGTCTCTTGGTGTTGATAGATATTTTGGAACTTTTCGTGTGAAGAGGATTTGTGATGATGCTGCAATTATTTCAATGTTTGAACTTGCTCAGACTGAGATAACACCTTTGAAGGATGCACCTGTTCCTGTGTTTGGTCCTGAGTTGGGTGAAACTTCTAATACAAAATGTTTAGAGAATACTGTCATGTCATCTTTTCTTCAAAAAGAAGCAAATGTTGCTGGACTTGATGATATACACTTAGATATGGAAGGTGTTAAGGAGGTTGATATTCAAGATCATTCTGTTGATAGTGATGAAAATGTAGTGCTGTCGGATGATATTGGCTCACTTATTCGGTCTGATGTTGATGAAACTCAGGATTTGCTCTCACACCTTTTAGATGACTCAAGGAAAGTTAATGTGCCTAATGTTGTTCCCAAAGATGCAGTATTTTTAAAGGTGAAGAGGAATCTTGAGGCTGATTTTGATAAGGAACTTGAGGATACTGTTGCTCATTGCTCTAAAATAATCAAGATTGAAGATAGTTAA 1614 0.3705 MRRVTQSNKIQATIRKQLINRFKDNIIEGNCYKMCYFSVVPNHGSYRATKHEFKLTFLFRTIVTTLPDDIIPRVCFTLYPFEEILQMSQDHDYLVDVIGLLTLVGEEKSYDKDGKTIKMVVVELSSQKMVLRCALFGEYVDQLNHFLSSGYVEQPVVILQLAKVKLFRGQPGLQNVMKATKIYLNPDLAAVFDFRKSVVEQGINGTQPLFIANEGKTISLEDDFMRLTKKSTIDELQENKEDGTFVILGTITDVVEEGCWWYSTCVCGKTVHPESGVYFCDMCMHHVTNVIPRYRLKVVVSDETGQGIFVLFDRETTYLVKKTCGDLFNEVHKDSKVLCGDDYPIIFRNLEGKKVLLKVDTKSLGVDRYFGTFRVKRICDDAAIISMFELAQTEITPLKDAPVPVFGPELGETSNTKCLENTVMSSFLQKEANVAGLDDIHLDMEGVKEVDIQDHSVDSDENVVLSDDIGSLIRSDVDETQDLLSHLLDDSRKVNVPNVVPKDAVFLKVKRNLEADFDKELEDTVAHCSKIIKIEDS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3996 537 SUPERFAMILY Nucleic acid-binding proteins 76 198 IPR012340 -
Ahy3g3996 537 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 14 328 - -
Ahy3g3996 537 Gene3D - 220 393 IPR012340 -
Ahy3g3996 537 Pfam Domain of unknown function DUF223 8 94 IPR003871 -
Ahy3g3996 537 SUPERFAMILY Nucleic acid-binding proteins 231 392 IPR012340 -
Ahy3g3996 537 PANTHER REPLICATION FACTOR A 1, RFA1 14 328 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy3g3996 537 CDD RPA1_DBD_C 230 376 IPR013955 -
Ahy3g3996 537 Gene3D - 70 206 IPR012340 -
Ahy3g3996 537 SUPERFAMILY Nucleic acid-binding proteins 7 69 IPR012340 -
Ahy3g3996 537 Pfam Replication factor-A C terminal domain 247 362 IPR013955 -
Ahy3g3996 537 CDD RPA1_DBD_A_like 8 63 - -
Ahy3g3996 537 Gene3D - 4 68 IPR012340 -
Ahy3g3996 537 CDD RPA1_DBD_B_like 96 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3996 Ahy-Chr3 139250024 139254368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3996 9 305 Core DNA Replication Machinery Family AT2G06510 21.656 7.01e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3996 - - ahf:112791275 958.362