Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3972 ATGAACAATAAACTTTACTCTTCGCTATGCACATTCTTCACTTACTGTTTTTCATTGCAATTGCACTACTACTTCTTCATGAGCCTCATTGTTAGTGGAACCAACTTCACTACTAGAGATAAGCATGCACTTGTTGCTCTCAAATCTTCCATAACTCAGGACCCTCACCACTTCCTCACACATAATTGGTCCACCAACTTCTCAGTATGCAACTGGTTTGGTGTCACCTGTGATCATCGCCATGGAAGGGTAAGAACCTTGAATCTTGGTGACATGGGTCTTAGTGGTACCATACCCTCTCATTTGGGGAACCTCTCCTTCCTCATTGAACTCAACCTTGGTGGTAACACTTTCCATCACAACTTGCCACAAGAACTAGTTCATCTTCGAAGATTGAAGTCACTTAACTTGAGCTACAATGAATTTAGTGGCAATGTTCCACAATGGATAGGAGCCTTATCTTCTCTTCAACACTTGAACCTTAAAAACAATAGGTTTGGTGGTGTTATTCCAAAGTCTATATCAAATTTAACAGTGCTAGAGACCTTGGAAATTGGCCACAATCTTATTGAAGGCTCCATTCCATATGAAGTTGGCAGAATGAGCCAATTGAGGATCTTATCCATGTCAGTAAACCATCTCTCCGGTGTCATTCCTCCAACTATTTCTAACCTCTCTTCTTTGCGTGGAATCAGTTTGTCTTATAACTCTCTCTCAGGAGGCATTCCAGTGGAGATTGGTGAACTTCCGGAGCTAAGAGTGGTGTATCTTGGAAATAATCCACTTGGTGGATCCATACCAACAACAATGTTGAATAGTTCAACGCTGCAAGACATTGAGATTGGGTCAAGCAACTTATCTGGGACCCTACCATCAAACTTATGTGGTGGACTTGCAAGAATCCAAGTGCTTTACATAGCTTTCAACCTGCTTTCTGGTAAACTGCCTTCGGTTTGGCACCACTGCAAAGAGTTGACCGATGTTGACTTATCAAACAACAAGTTCAGCCAAGGGAACATACCCCGTGATATTGGAAACTTAACTATGCTTGCTTCCTTGTATCTTAATCAAGCCAACTTACAAGGAGAAATTCCACCCTCTCTTTTTAACATATCTTCAATGAGAGTACTCAACCTTGAACAAAACAAATTGAATGGTAGCCTCACAGAAGAGATGTTTCTTCAGCTTCCTTTACTAGAATACATTTATCTGGTAGATAATCAATTTGTTGGAAGTATTCCAAAAACAATAAGCAACTGCACCATGCTCCAAGTGTTACATTTGGGAAGCAACTACTTCACAGGTTCTATACCAGAGGGCATTGGAGATCTTCTACTCACAAGCTTAAGCATGGGAAATAACCATTTAAGTGGATCAATTCCCTCAAATATCTTCAACATGTCTTCACTGAGTTACTTATATCTAGCAAATAATTCCCTCTCAGGTTCTCTTCCATCACATATCAGCCTTGAAAACATGGAAGAGCTAAACTTGTATGGAAACAAACTTAGTGGAAATATTCCAAGTAGCATATCCAATGCTACAAAGCTTAACTACATGGACTTGAAGTTAAATAAATTCAGTGGAGTTATCCCAAATACTATTGGGAATTTGAGAAATCTTCAGCAGCTTGATTTAGGATACAATAATTTAACCACTCATTCTTCCACTCTTGAATTAATGTATCCTTCTTCCTTGTGCGATCTTTACATATCAGGGAATCCATTCCATGCAAAGCTTCCCAAGTCAATTGGAAATATGTCCAATTTGGAACTATTTGATGCTGATGCTTGCAGTATTGATGGTGAAATCCCTTTGGAAATTGGAAACTTAACCAATTTGTACGCGCTAAGTTTGTACCAGAATGATTTAAGTGGAACCATTCCAACTACAATTAAAGGTTTGCAGTCTCTTCAATATTTGAATCTTGGCAACAACCGTCTGCAGGGAACCATCATCAGCGAAATCTGCAAAATCAAGCAGCTGAGTGAGTTGTACATAACTGAGAACAAGCTAATTTCTGGAGAGGTTCCAACTTGCTTTGGTAATCTTACTTCTCTAAGAAAACTTTACTTGAACTCCAACAAACTCAGTAAGGTGCCTTCTTCTCTTTGGAGCCTCAGAGACATTCTTGTGGTGAACTTGTCTGACAATGCTTTAACTCTGTCTCTTCCAATTGAAATTGGGAACTTAAAGGCTGTGACTTTCTTGGATCTATCAAAGAATATGATCTCAGGAAGCATTCCTGGGGCCATTTCTGGATTGCAAAATTTGCAAATTCTCAACTTATCACAAAATAAATTGGTAGGGGGTATTCCTGATTCACTTGGCAGTTTGATAAGTTTGACAGATTTGGACTTATCTCAAAACAACTTGTTTGGCTTGATTCCAAGATCATTGGAGTCACTTCATTATCTTGAATTCATCAATCTTTCTCATAATAGTTTGGAAGGAGAGATTCCGAGTGGTGGACCTTTCGAAAATTTCACTGCTCAATCTTTCATGTTTAATAAAGCACTTTGTGGAAATGCCAGATTACAAGTCCCAGCATGCAGTAAAGTAAAGAAGAAAGGGTCAAATGCAAACATATTCTTCATCAAATGCATATTGCCTATAATGGTTTCAATCATTCTGGTTGTTTTCTGTGTGTTTTTTCTCGTCAGGCGTCGAAGAAAGAATGGTGGTGATACTAACGAAGGAACATTATCAGCATTACCAGCAGCCAGAATGATTTCGTACTATGAACTATCACAGGCAACTAATGGATTTGATGAGAGTAATTTGCTTGGTAGGGGCAGTTTTGGCTCTGTGATCAAAGGTTTACTTTCAAATGGGATGGTGGTTGCTGTCAAAGTGTTTAACTTGGACTTGGAATTAGGATCAAAGAGCTTCAGTGTAGAATGCGAAGCAATGCGCAATCTGCGCCATCGAAATCTCATCAAGATCATAGATTGTTGTTCAAGTATAGATTACAAGCTTTTAGTGATGGAGTTCATGCCTAATGGGAGCCTTGAGAGATGGTTGTATTCTCATAACCATTGTTTGGACTTCTTGCAAAGGCTAAATATAATGATAGATGTGGCATCTGCATTGGAGTATCTGCATCATGGATCTTCACCTATAGTGGTTCATTGTGATGTCAAACCTTGTAATGTCTTATTGGATGAAGACATGGTTGCCCATGTCAGTGACTTTGGCATTGCCAAATTGCTTGGAGAGGGACAATCCAAAGAATATACCAAGACCATGGCTACAGTTGGCTACATTGCACCGGAGTTTGGATCCAAAGGGATTATCTCTACAAAGGGAGATGTATACAGTTTTGGGATAATGCTGATGGAAACATTCACAAGAAAGAAGCCAACAGATGACTTGTTTGTTGCAGGATTAAGCATGAAAGGTTGGATTAGTAAATCATTACCCCATGCAATTGATCGAGTTGTGGATTCCAACTTGTTACAAGATGAAGGTCACCACCATGTTGATGACATAATAGCATCTACATCATCTATCTTGAAACTGGCCTTGAATTGTTGTGAGGATTTACCTGAAGAACGAATGAACATGACAGATATTGCTGCATCATTGAACAAAGTTAAGGCCATGTTTCTTAAAGCTAGTGACAAGGATGTCGTGCGGTTTTGTAGAAAATGA 3654 0.3919 MNNKLYSSLCTFFTYCFSLQLHYYFFMSLIVSGTNFTTRDKHALVALKSSITQDPHHFLTHNWSTNFSVCNWFGVTCDHRHGRVRTLNLGDMGLSGTIPSHLGNLSFLIELNLGGNTFHHNLPQELVHLRRLKSLNLSYNEFSGNVPQWIGALSSLQHLNLKNNRFGGVIPKSISNLTVLETLEIGHNLIEGSIPYEVGRMSQLRILSMSVNHLSGVIPPTISNLSSLRGISLSYNSLSGGIPVEIGELPELRVVYLGNNPLGGSIPTTMLNSSTLQDIEIGSSNLSGTLPSNLCGGLARIQVLYIAFNLLSGKLPSVWHHCKELTDVDLSNNKFSQGNIPRDIGNLTMLASLYLNQANLQGEIPPSLFNISSMRVLNLEQNKLNGSLTEEMFLQLPLLEYIYLVDNQFVGSIPKTISNCTMLQVLHLGSNYFTGSIPEGIGDLLLTSLSMGNNHLSGSIPSNIFNMSSLSYLYLANNSLSGSLPSHISLENMEELNLYGNKLSGNIPSSISNATKLNYMDLKLNKFSGVIPNTIGNLRNLQQLDLGYNNLTTHSSTLELMYPSSLCDLYISGNPFHAKLPKSIGNMSNLELFDADACSIDGEIPLEIGNLTNLYALSLYQNDLSGTIPTTIKGLQSLQYLNLGNNRLQGTIISEICKIKQLSELYITENKLISGEVPTCFGNLTSLRKLYLNSNKLSKVPSSLWSLRDILVVNLSDNALTLSLPIEIGNLKAVTFLDLSKNMISGSIPGAISGLQNLQILNLSQNKLVGGIPDSLGSLISLTDLDLSQNNLFGLIPRSLESLHYLEFINLSHNSLEGEIPSGGPFENFTAQSFMFNKALCGNARLQVPACSKVKKKGSNANIFFIKCILPIMVSIILVVFCVFFLVRRRRKNGGDTNEGTLSALPAARMISYYELSQATNGFDESNLLGRGSFGSVIKGLLSNGMVVAVKVFNLDLELGSKSFSVECEAMRNLRHRNLIKIIDCCSSIDYKLLVMEFMPNGSLERWLYSHNHCLDFLQRLNIMIDVASALEYLHHGSSPIVVHCDVKPCNVLLDEDMVAHVSDFGIAKLLGEGQSKEYTKTMATVGYIAPEFGSKGIISTKGDVYSFGIMLMETFTRKKPTDDLFVAGLSMKGWISKSLPHAIDRVVDSNLLQDEGHHHVDDIIASTSSILKLALNCCEDLPEERMNMTDIAASLNKVKAMFLKASDKDVVRFCRK* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3972 1217 SMART serkin_6 923 1203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g3972 1217 Pfam Leucine rich repeat N-terminal domain 40 78 IPR013210 -
Ahy3g3972 1217 PANTHER - 299 552 - -
Ahy3g3972 1217 Pfam Leucine Rich Repeat 781 803 IPR001611 GO:0005515
Ahy3g3972 1217 Pfam Leucine Rich Repeat 155 177 IPR001611 GO:0005515
Ahy3g3972 1217 Pfam Leucine Rich Repeat 757 779 IPR001611 GO:0005515
Ahy3g3972 1217 ProSiteProfiles Leucine-rich repeat profile. 686 707 IPR001611 GO:0005515
Ahy3g3972 1217 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1042 1054 IPR008271 GO:0004672|GO:0006468
Ahy3g3972 1217 Gene3D Ribonuclease Inhibitor 297 490 IPR032675 -
Ahy3g3972 1217 SMART LRR_sd22_2 779 805 - -
Ahy3g3972 1217 SMART LRR_sd22_2 611 637 - -
Ahy3g3972 1217 SMART LRR_sd22_2 177 198 - -
Ahy3g3972 1217 SMART LRR_sd22_2 731 757 - -
Ahy3g3972 1217 SMART LRR_sd22_2 538 560 - -
Ahy3g3972 1217 SMART LRR_sd22_2 684 706 - -
Ahy3g3972 1217 SMART LRR_sd22_2 201 227 - -
Ahy3g3972 1217 SMART LRR_sd22_2 490 516 - -
Ahy3g3972 1217 SUPERFAMILY Protein kinase-like (PK-like) 904 1196 IPR011009 -
Ahy3g3972 1217 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 164 391 - -
Ahy3g3972 1217 PANTHER - 367 1203 - -
Ahy3g3972 1217 PANTHER - 23 172 - -
Ahy3g3972 1217 SUPERFAMILY RNI-like 490 822 - -
Ahy3g3972 1217 Pfam Protein kinase domain 924 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g3972 1217 SMART LRR_typ_2 755 778 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 201 225 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 684 707 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 635 659 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 396 420 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 249 273 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 538 561 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 446 467 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 371 395 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 490 514 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 731 754 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 779 802 IPR003591 -
Ahy3g3972 1217 SMART LRR_typ_2 153 177 IPR003591 -
Ahy3g3972 1217 Gene3D Phosphorylase Kinase; domain 1 905 998 - -
Ahy3g3972 1217 ProSitePatterns Protein kinases ATP-binding region signature. 929 951 IPR017441 GO:0005524
Ahy3g3972 1217 Pfam Leucine rich repeat 492 551 IPR001611 GO:0005515
Ahy3g3972 1217 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Ahy3g3972 1217 Pfam Leucine rich repeat 613 672 IPR001611 GO:0005515
Ahy3g3972 1217 Pfam Leucine rich repeat 350 409 IPR001611 GO:0005515
Ahy3g3972 1217 Gene3D Ribonuclease Inhibitor 558 859 IPR032675 -
Ahy3g3972 1217 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 367 1203 - -
Ahy3g3972 1217 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 172 - -
Ahy3g3972 1217 SUPERFAMILY L domain-like 39 336 - -
Ahy3g3972 1217 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 299 552 - -
Ahy3g3972 1217 Gene3D Ribonuclease Inhibitor 491 557 IPR032675 -
Ahy3g3972 1217 ProSiteProfiles Protein kinase domain profile. 923 1204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g3972 1217 PANTHER - 164 391 - -
Ahy3g3972 1217 Gene3D Transferase(Phosphotransferase) domain 1 999 1213 - -
Ahy3g3972 1217 SUPERFAMILY L domain-like 338 555 - -
Ahy3g3972 1217 Gene3D Ribonuclease Inhibitor 37 193 IPR032675 -
Ahy3g3972 1217 Gene3D Ribonuclease Inhibitor 194 296 IPR032675 -
Ahy3g3972 1217 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3972 Ahy-Chr3 139038671 139044516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3972 24 1201 Receptor kinase-like Gene Family AT5G46330 32.013 7.77e-170 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ahy3g3972 Pkinase 2.70E-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3972 - K13420 gmx:100784397 1690.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4243 13 142012475 142022745 Ahy3g3972 3 139038671 139044516 hybridization