Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3905 ATGAAGCTTTCTAGTGGTTGGGAAATGGAAGGGTTGAAACCAGTGATACTAATGGTGTTACTACAGATATTATATGCAGCGCTGAACGTGTTGTATAAGCTCGCTATATTTGATGGAATGAGCATGAGAGTTGCTTCTGCTTACCGTCTCATCTTTGCTTCTGCCTTTACTCTCCCACTTGCTCTCTTCTTTGATAGAAATAACCCACCAAGAATTACCAGCAAGGTGCTTATTATGGAATGTCTTTGTGGATTTTTCGGCGGAAGTTTATTTCTCAACCTTTATTTTGCGGCCCTGTCTCTGTTGCCCGCGACGTTCATGTTGGCCATCAACAACCTTGCTCCGGCTGTCACCTTCGTCATGGCCATAATTTTCCGTTTGGAAAAATTGAACTTGGGATCCGCAGCGGGAAAAGCAAAGGTACTAGGAACAGTAACTGGAATTACAGGGGCAATGGTGTTAAGCTTTTTCAGAGGTGTTGAAATTGATATTTGGTCCACACACATAGATCTCTTGCATCATAATCATCCGCCACCACATGCTGAATATGCCAACAAACTCTTGGGTCTCACATTTGCCATAGCAAGCTGCTGCTCCTTTTCTCTCTGGCTCAACATTCAGGGTAAAATGAATGGTAAAGAATACCCAAGGCATCACACAGGGACAGCATTGATGTCCACAATGGGCGCAATACAAGCCACTGTTTTTGCTCTTTGTGTTGATAGGGATTGGACCCAATGGCGCCTTGGTTGGAACATAAGGCTTCTCACTGTGGCTTACGCGGGAATCGTAGCATCGGGTATAGTGATTATAATTACTGCGTGGTGCATAAAAGTGAGAGGCCCTCTATTTGCGTCTATTTTCAATCCTCTACAGCTTCTGCTTGTGGCTATTGTTGCTTCTTTGATTCTCAATGAGAATTTATATTTAGGAAGTGTGGTTGGAGGAGTGGTGATCGTGATTGGCTTGTACACGGTGCTATGGGGAAAGAGCAAAGAAATTGAAGAGAAGCAGAGGATGGATGAGTTAGTTTCATTACAAATAATGAATAATAATAAAGGGTCCCAAGTTGTTGATGTTGATGTTGTTGTTGATCATAAAAGTGAACAACACAACAATATACAGTGA 1128 0.4255 MKLSSGWEMEGLKPVILMVLLQILYAALNVLYKLAIFDGMSMRVASAYRLIFASAFTLPLALFFDRNNPPRITSKVLIMECLCGFFGGSLFLNLYFAALSLLPATFMLAINNLAPAVTFVMAIIFRLEKLNLGSAAGKAKVLGTVTGITGAMVLSFFRGVEIDIWSTHIDLLHHNHPPPHAEYANKLLGLTFAIASCCSFSLWLNIQGKMNGKEYPRHHTGTALMSTMGAIQATVFALCVDRDWTQWRLGWNIRLLTVAYAGIVASGIVIIITAWCIKVRGPLFASIFNPLQLLLVAIVASLILNENLYLGSVVGGVVIVIGLYTVLWGKSKEIEEKQRMDELVSLQIMNNNKGSQVVDVDVVVDHKSEQHNNIQ* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3905 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 154 - -
Ahy3g3905 375 PANTHER WAT1-RELATED PROTEIN 12 354 IPR030184 GO:0016021|GO:0022857
Ahy3g3905 375 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020|GO:0016021
Ahy3g3905 375 Pfam EamA-like transporter family 13 155 IPR000620 GO:0016020|GO:0016021
Ahy3g3905 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 332 - -
Ahy3g3905 375 PANTHER MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 12 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3905 Ahy-Chr3 138413145 138415365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3905 12 353 Nodulin-like Gene Family AT1G25270 40.233 2.53e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3905 - - gmx:100809587 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4182 13 141308336 141311035 Ahy3g3905 3 138413145 138415365 hybridization
Ahy20g0851 20 10965498 10970258 Ahy3g3905 3 138413145 138415365 PCT
Ahy10g0582 10 5807540 5814390 Ahy3g3905 3 138413145 138415365 PCT