Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3894 ATGGGGGATAGCAATAATGTCAATCTTCCACCGGGGTTTCGATTTTATCCCACTGATGAAGAGCTTGTAGTCCATTTCCTTCAGAGAAAAGCAGCACTTCTACCTTGCCACCCTGATGTCATTCCTGATCTTGATCTCTACCCTTTTGATCCATGGGAACTTGATGGTATCATTCTTTCTCTATGTTCCAATACTTGCATGCACATTGCAAGAGAATTGAAGTTGATGAATACAATCATGTGTGTGTCTGTGTGTGTATGTGCAGGTAGAGCTTTGGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGCCAATGGTTATTGGAATCCAATGGGAATTGAAGAGGCAGTGGTTTCAAACTCAAGCAACAGGAGAGTTGGTATCAAGAAATTTTATGTGTTCTATGTTGGAGAAGCCCCTCATGGTAACAGAACCAATTGGATCATGCAAGAGTATCGTCTTTCAGATTCTGCAGCATCCTCTAGCAGATCATCAACCAAAAGAAAATCACAACCAAAAACAGATCATAGTAAATGGGTGGTATGTAGAGTTCATGAAAGTGATGAAAATGATGATGATGGTGATGGTGATGGAACAGAACTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAGTAAGCTTGCCAAATTAG 687 0.409 MGDSNNVNLPPGFRFYPTDEELVVHFLQRKAALLPCHPDVIPDLDLYPFDPWELDGIILSLCSNTCMHIARELKLMNTIMCVSVCVCAGRALAEGNQWYYYSRRTQNRVTANGYWNPMGIEEAVVSNSSNRRVGIKKFYVFYVGEAPHGNRTNWIMQEYRLSDSAASSSRSSTKRKSQPKTDHSKWVVCRVHESDENDDDGDGDGTELSCLDEVFLSLDDLDEVSLPN* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3894 228 Pfam No apical meristem (NAM) protein 10 161 IPR003441 GO:0003677|GO:0006355
Ahy3g3894 228 Gene3D NAC domain 18 198 IPR036093 GO:0003677|GO:0006355
Ahy3g3894 228 ProSiteProfiles NAC domain profile. 9 194 IPR003441 GO:0003677|GO:0006355
Ahy3g3894 228 SUPERFAMILY NAC domain 6 192 IPR036093 GO:0003677|GO:0006355
Ahy3g3894 228 MobiDBLite consensus disorder prediction 166 206 - -
Ahy3g3894 228 MobiDBLite consensus disorder prediction 175 196 - -
Ahy3g3894 228 PANTHER NAC TRANSCRIPTION FACTOR 56 6 225 - -
Ahy3g3894 228 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 6 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3894 Ahy-Chr3 138316227 138320950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3894 6 193 NAC Transcription Factor Family AT4G27410 40.306 7.85e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy3g3894 NAM 4.80E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3894 - - gmx:100788893 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4170 13 141206937 141208185 Ahy3g3894 3 138316227 138320950 hybridization
Ahy3g3894 3 138316227 138320950 Ahy20g0839 20 10819787 10821093 PCT
Ahy3g3894 3 138316227 138320950 Ahy10g0567 10 5667741 5669291 PCT
Ahy20g0839 20 10819787 10821093 Ahy3g3894 3 138316227 138320950 PCT
Ahy10g0567 10 5667741 5669291 Ahy3g3894 3 138316227 138320950 PCT