Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3857 ATGGCGGAGCGTTCTTCCTCTTTTGGACTTGGTCCTCGATTAGATCTTCAGCAACTGCAGTTTGAAGCACAGCATCGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGTAACTATCGTATGTTTCATATCACATCAGAACCACCAAACAGGCCACCAAGTGGTTCGCTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTCAGAAAGGATGGACATAATTGGAGAAAGAAAAAGGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCACGGAGAAGAAAATGAAAATTTTCAGAGGCGTAGCTATTGGATGCTTGAACAGGATATGATGCATATAGTATTTGTCCACTATTTGGATGTTAAGGTTAACAAGACCAATATCGGTAGAAATATTGATACAGATGAGGCTATGTCAGAATCCCAGAAGGGCAGTTCTGTGTTATCTGGCTTCCCCACAAGTTATAACAGCATGCCTTCTCGAAGTACAGATTCCATGAGTCCGACTAGCACTTTGACGTCATTATGTGAAGATGCTGATTCTGGTGATCATGGACAATCAACAATTTCTGTAACAGACTACATTCCACATGTCCAAGGGGATACATCTAGATTAGGTATTACTGCTTACATTGAGGACCAAAAATCACATGTCATGCCATTAAGGGACACTATCACAGAGCAATCTGTTGGATTGTATACACCTTGTTCTTCCATTTCATCCGGTTCAATGGGAAGCACCCTTGAACAAGAAAAAGCTGTTCCTGAGAATCTCTACGGATCTAAAAGTGGCCTCAATGAGGACTCAAGGGGTTCTCAGTCTACCCAGTCAAATTGGCAGATTACTTTTGATGAGAATACTGGACCTTTGCCAAGATGGAGCCTAACCGAATCGTTGGGTTTGGAATTTGAATCTGATTATAGCATGGCTTTATTTGGGAGTGAAACTGATAATGCAATTCCAGAGATTTGCCCTGACTTGTTCACTTCTAATGGAGAGCTAAAAGAGCAACCTGTGCAACAGAAGTTCCCAAAGCAGTCTACAGATGCACAATCTCAGCATGCACCAAGATCCGACAGTGAATATGAACTTCCTCGGGAGGATAGTACTGGCTATTCCTTGAATGCAAAGCATGCATTACTTGATGGAGAGGAGAACCTGAAGAAGGTTGATAGCTTCTCAAGGTGGATTACTAAAGAACTTGGAGAGGTGGATGATCTGCATCTGCAGTCTTCCCCTGGTATTTCATGGAGCACAGATGAGTGTGGGCATGTAATAGATGATACATCATTGAACCTGTCCTTATCCCAAGATCAGCTGTTCAGCATAAGTGATTTTTCACCTAAATGGGCTTATGCAGATTCCGAGATTGAGGTGTTGATTATTGGAGCATTTTTGAAGAGTCAACTGGAGGTGGAAGCCTGTCACTGGTCCTGTATGTTTGGTGAAGTGGAGGTTCCTGCTGAGATTTTAGCCAATGGAATTATGTGCTGTCAAGCTCCACCTCATCAGGTTGGACGTGTACCTTTCTATGTGACCTGTTCCAATAGGTTTGCTTGTAGTGAAGTGAGGGAATTTGAGTTCAGAGAGGGATTTGCTAGGAATGTAGATTTTGCAGATTTTTTCTACAGTTCAACTGAAATGATGCTTCATTTGCGACTTGATGAGTTACTTTCTTCGAAATCAGTGCTATCTACTAATCAAGATTTTGAGGGTTATATGGAGACAAGAAACTTAATTTTTAAGCTCATCTCACTTAAAGAGGAAGAGGAATATTCACATAAGGAAGAGGCAACTGCAGGGTTGAGTGTATCACAACACAAATTGGAGGAGCATGTGTTTCACAGGAAGATTAAAGAGAAGCTCTACTCATGGCTTCTTCACAAGGTAACTGAAGGTGGTAAAGGGCCAAATGTATTAGACAAGGATGGTCAGGGTGTGTTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCAATAACTCCAGTTATAACTGCTGGGGTTAATATCAACTTCCGTGATGTGAATGGATGGACAGCTTTACATTGGGCTGCATCCTGTGGCAGAGAGCGAACAGTTGCTGTCCTTGTCTCCATGGGTGCAGCAGCTGGAGCATTGACAGATCCAAGTCCAGCATTTCCTTCTGGTAGAACAGCTGCTGATCTTGCTTCTAGCAATGGACATAAAGGAATCTCTGGTTTTCTTGGAGAGTCATTATTAACTAGCCACCTTGCGTCACTTACAATGGATGATCCAAGTGAAGATGGTAGGAATAAAACTTTAGGTGGGAAAGCAGTGCAGACAGCTTCGGAGCGAAGTGCAACACCTCTACTTTATGGTGATGTATCGGATACTCTCTGCCTTAAGGATTCTCTTTCTGCTGTCCGTAATGCTACACAAGCCGCCGATCGCATACATCAAGTATTTAGGATGCAGTCATTTCAGAGGAAGCAGTTAGCTCAGTGTGAAGACGATGATGAGTTTGGATTGTCAGATCAACAGGTTCTTTCCTTTATAGCTTCTAGGGCTTGCAAATCTGGACAAGGAGAGGGTTTAGTGAATGCTGCTGCAATACAAATTCAGAAAAAATTTCGTGGTTGGAAGAAGAGAAAAGAATTCCTGATCATTCGCCAAAGAGTTGTCAAAATCCAGGCCCACGTAAGAGGTCACCAGGTAAGGAAGCAATACAAATTAATCTGGTCTGTTGGAATCCTTGAGAAGGTCATATTACGCTGGAGACGTAAGGGCAGAGGCTTACGTGGATTCCGACCAGATACCCTTAACATGGTCCCCAACCCACCAAGCAATCCTTCACAAGAGGATGACTATGATGTTCTCAAAGAAGGAAGGAAGCAAAGTGAAGAAAGGTTCCAAAAAGCCCTTTCAAGGGTGAAATCCATGGTCCAGTACCCGGAGGCACGTGCTCAATACCGGCGGGTGCTGAATGTAGTAGAGGACTTTCGTCAAACCAAGCAGGAATATACCAATTCGGAAGACACTGTTGATGGGGTGGCGGATTTGATTGATATTGATATGCTTTTGGACGATGAGAACTTCTTGCCTATAGCATATGATTGA 3123 0.4291 MAERSSSFGLGPRLDLQQLQFEAQHRWLRPAEICEILRNYRMFHITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDMMHIVFVHYLDVKVNKTNIGRNIDTDEAMSESQKGSSVLSGFPTSYNSMPSRSTDSMSPTSTLTSLCEDADSGDHGQSTISVTDYIPHVQGDTSRLGITAYIEDQKSHVMPLRDTITEQSVGLYTPCSSISSGSMGSTLEQEKAVPENLYGSKSGLNEDSRGSQSTQSNWQITFDENTGPLPRWSLTESLGLEFESDYSMALFGSETDNAIPEICPDLFTSNGELKEQPVQQKFPKQSTDAQSQHAPRSDSEYELPREDSTGYSLNAKHALLDGEENLKKVDSFSRWITKELGEVDDLHLQSSPGISWSTDECGHVIDDTSLNLSLSQDQLFSISDFSPKWAYADSEIEVLIIGAFLKSQLEVEACHWSCMFGEVEVPAEILANGIMCCQAPPHQVGRVPFYVTCSNRFACSEVREFEFREGFARNVDFADFFYSSTEMMLHLRLDELLSSKSVLSTNQDFEGYMETRNLIFKLISLKEEEEYSHKEEATAGLSVSQHKLEEHVFHRKIKEKLYSWLLHKVTEGGKGPNVLDKDGQGVLHLVAALGYDWAITPVITAGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGAAAGALTDPSPAFPSGRTAADLASSNGHKGISGFLGESLLTSHLASLTMDDPSEDGRNKTLGGKAVQTASERSATPLLYGDVSDTLCLKDSLSAVRNATQAADRIHQVFRMQSFQRKQLAQCEDDDEFGLSDQQVLSFIASRACKSGQGEGLVNAAAIQIQKKFRGWKKRKEFLIIRQRVVKIQAHVRGHQVRKQYKLIWSVGILEKVILRWRRKGRGLRGFRPDTLNMVPNPPSNPSQEDDYDVLKEGRKQSEERFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKQEYTNSEDTVDGVADLIDIDMLLDDENFLPIAYD* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3857 1040 SMART CG_1_2 19 137 IPR005559 GO:0003677
Ahy3g3857 1040 Pfam IQ calmodulin-binding motif 893 912 IPR000048 GO:0005515
Ahy3g3857 1040 Pfam IQ calmodulin-binding motif 870 888 IPR000048 GO:0005515
Ahy3g3857 1040 MobiDBLite consensus disorder prediction 938 957 - -
Ahy3g3857 1040 Pfam Ankyrin repeats (3 copies) 663 746 IPR002110 GO:0005515
Ahy3g3857 1040 ProSiteProfiles Ankyrin repeat region circular profile. 691 716 - -
Ahy3g3857 1040 ProSiteProfiles IQ motif profile. 869 897 IPR000048 GO:0005515
Ahy3g3857 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 914 IPR027417 -
Ahy3g3857 1040 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 196 1040 - -
Ahy3g3857 1040 SMART iq_5 890 912 IPR000048 GO:0005515
Ahy3g3857 1040 SMART iq_5 867 889 IPR000048 GO:0005515
Ahy3g3857 1040 ProSiteProfiles Ankyrin repeat profile. 691 723 IPR002110 GO:0005515
Ahy3g3857 1040 MobiDBLite consensus disorder prediction 151 187 - -
Ahy3g3857 1040 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 201 - -
Ahy3g3857 1040 Gene3D - 627 757 IPR036770 -
Ahy3g3857 1040 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 6 201 - -
Ahy3g3857 1040 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 196 1040 - -
Ahy3g3857 1040 SUPERFAMILY Ankyrin repeat 647 750 IPR036770 -
Ahy3g3857 1040 Gene3D - 868 915 - -
Ahy3g3857 1040 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Ahy3g3857 1040 Gene3D Immunoglobulins 451 546 IPR013783 -
Ahy3g3857 1040 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Ahy3g3857 1040 SUPERFAMILY E set domains 458 544 IPR014756 -
Ahy3g3857 1040 MobiDBLite consensus disorder prediction 352 373 - -
Ahy3g3857 1040 MobiDBLite consensus disorder prediction 352 383 - -
Ahy3g3857 1040 Pfam IPT/TIG domain 457 534 IPR002909 -
Ahy3g3857 1040 ProSiteProfiles IQ motif profile. 891 916 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3857 Ahy-Chr3 137985645 137993325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3857 1 1006 CAMTA Transcription Factor Family AT5G64220 53.691 0.0 1057
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Ahy3g3857 CG-1 2.30E-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3857 K21596 - gmx:100795682 1545.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4133 13 140859304 140866998 Ahy3g3857 3 137985645 137993325 hybridization
Ahy3g3857 3 137985645 137993325 Ahy20g0806 20 10275571 10284142 PCT
Ahy3g3857 3 137985645 137993325 Ahy10g0534 10 5272572 5280870 PCT
Ahy20g0806 20 10275571 10284142 Ahy3g3857 3 137985645 137993325 PCT
Ahy10g0534 10 5272572 5280870 Ahy3g3857 3 137985645 137993325 PCT