Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3850 ATGGAAAACGACGACGTTGATATGCTCGGCGCCGAACACACCGAAGCTGACTTGGACGACATGAAGAGGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGAAGGAGATGCAAGCCAAGGTCGAGAAGGAGATGGGATCTATGCAAGATCCTGCTACTGCTGGTGCAAGTCAGAGCAATAGAGAGGAAGTAGATGCTCGGTCAGTCTTTGTAGGCAATGTGGACTATTCATGTACTCCCGAAGAAGTGCAGCAACATTTTCAATCATGTGGAACAGTAAACCGTGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCATATGTAGAGTTTCTTGAAGTTGAGGCTGTTCAAGAGGCTCTTCTGCTGAATGAATCTGAACTACATGGGCGCCAATTGAAGGTGACTGCAAAGAGGACCAACATACCAGGGATGAAGCAGTATCGACCCCGCCGTTCCAATCCTTACATGGGGTTTCGAGGCAGAGCTCCATTTGCTCCTCCATTTGCCTTTTCCCCATATGGATACGGAAAGGTTCCAAGGTTCAGGATGGCAATGCGCTACAGCCCCTATTATTAA 591 0.4839 MENDDVDMLGAEHTEADLDDMKRRLKEMEDEAAALKEMQAKVEKEMGSMQDPATAGASQSNREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMGFRGRAPFAPPFAFSPYGYGKVPRFRMAMRYSPYY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3850 196 CDD RRM_II_PABPs 69 140 - -
Ahy3g3850 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
Ahy3g3850 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Ahy3g3850 196 Gene3D - 7 141 IPR012677 -
Ahy3g3850 196 Coils Coil 11 45 - -
Ahy3g3850 196 PANTHER - 4 193 - -
Ahy3g3850 196 SUPERFAMILY RNA-binding domain, RBD 56 166 IPR035979 GO:0003676
Ahy3g3850 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 193 - -
Ahy3g3850 196 MobiDBLite consensus disorder prediction 43 65 - -
Ahy3g3850 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3850 Ahy-Chr3 137919704 137922221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3850 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 1.10e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3850 K14396 - csv:101213499 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4124 13 140766724 140769205 Ahy3g3850 3 137919704 137922221 hybridization
Ahy3g3850 3 137919704 137922221 Ahy20g0793 20 10076226 10079704 PCT
Ahy3g3850 3 137919704 137922221 Ahy10g0517 10 5121868 5125425 PCT
Ahy20g0793 20 10076226 10079704 Ahy3g3850 3 137919704 137922221 PCT
Ahy10g0517 10 5121868 5125425 Ahy3g3850 3 137919704 137922221 PCT