Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3812 ATGGAAGAAGAAGAGCACGAGGTGTACGGAGGAGAGATCCCTGACGTTGCAGAGATGGAAGGTGACGTTGACATGTCCGCTCCCGACGACGACCCCGAGGTCAAGGAGCTCGACGAAATGAAGCGCCGCCTTAAGGAGATGGAGGAGGAAGCTACGGCTCTTCGCGAGATGCAAGCTAAGGTCGAAAAGGAGATTGGCTCTGTTCAAGATCCTGCTACTGCTGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTCGATCTGTATTTGTAGGCAATGTTGATTATGCATGCACGCCAGAGGAAGTTCAGCAACACTTTCAATCATGTGGTACAGTGAACAGGGTCACCATCTTGACTGACAAGTTCGGCCACCCTAAAGGTTTTGCTTATGTGGAGTTCGTGGAAGTTGAAGCTGTTCAAGAGGCTCTTGTCTTGAATGAATCGGAGTTACATGGGCGTCAATTGAAGGTCTTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAGTATCGTCCTAGGCGCTATAATCCCTACATGGCATATGGCTTTAGGAGGCCATATCCTCCTCCTTACTTTTATTCTCCTTATGGATACGGGAAGGTTCCTAGGTTTAGAAGGTCAACTCGTTACATGCCATACTACTAG 648 0.4877 MEEEEHEVYGGEIPDVAEMEGDVDMSAPDDDPEVKELDEMKRRLKEMEEEATALREMQAKVEKEIGSVQDPATAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMAYGFRRPYPPPYFYSPYGYGKVPRFRRSTRYMPYY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3812 215 MobiDBLite consensus disorder prediction 64 85 - -
Ahy3g3812 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Ahy3g3812 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
Ahy3g3812 215 Coils Coil 34 64 - -
Ahy3g3812 215 Gene3D - 15 170 IPR012677 -
Ahy3g3812 215 CDD RRM_II_PABPs 88 159 - -
Ahy3g3812 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 213 - -
Ahy3g3812 215 MobiDBLite consensus disorder prediction 1 33 - -
Ahy3g3812 215 PANTHER - 1 213 - -
Ahy3g3812 215 SUPERFAMILY RNA-binding domain, RBD 77 185 IPR035979 GO:0003676
Ahy3g3812 215 SMART rrm1_1 88 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3812 Ahy-Chr3 137599022 137603166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3812 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 6.09e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3812 K14396 - gmx:100789721 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4089 13 140449129 140453293 Ahy3g3812 3 137599022 137603166 hybridization