Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3803 ATGAAGAGACTTAGCAGCTCCGATGATTCTTTGGGCGCTCTCATGACAATTTGTCCATCATCAACAACAGAAGAACACAGTCCAAGGAACAAACAGCAGGTGTACGGAAGGGAGTTCCAATCGATGTTGGATGGACTGGACGAAGACGGTTGCATCGAAGAATCGGGGCACCACGGCGAGAAGAAACGGCGCTTAAGCGTGGAACAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAGAACAAGCTGGAACCGGACAGAAAGGTGAAGCTAGCACAAGAACTGGGCTTGCAGCCAAGACAAGTTGCCGTTTGGTTCCAAAACCGCAGAGCCAGGTGGAAAACCAAGCAGTTAGAAAGAGACTACGGCGTTCTCAAAGCCAATTACGAAGCTCTTAAACTCAACTTCGAAAAACTCCAACAAGACAACCAAGCCTTGCATAAAGAGATTAAGGGATTGAAATCAAGGATGCAAGACGAACGCACCGAAAGCGATGCTTCGGTGAAGAAGGAACAAGTGGAGATGATAACAACGCTGCAAGACTCGGAGGAGAACCCTTGCGATCTTGAAACCGCTGCCGCCATTGCTGGATCGGACTCCAACAAGGACCTGAGCTACGATTGCTTCAACAAGGGCGACGGTGAGGGCGGTGATGGTGTGGGAGGAGCAGCATCGATATCGCTGTTCCCTTGTGGGGACTTGAAAGACGGTTCTTCGGATAGCGATTCAAGCGCGATCTTGAACGAAGAGAATAACAACAGCAGCTGTAGCCCCATGAACAACGCGGCGATGTCTTCGTGTGGTGGTGGGGTTCTGCAAAGTTCGAACCTTTTGATGTCTCAGCATGACGAGTCGCCATCATCCATGAGCTGCTTTCAGTTCCAGAAGGCGTACCAGGCCACACAGTACGTGAAGATGGAGGAGCACAACTTCTTCAGTGCAGATGAGACGTGCAATTTCTTCTCCGATGAACAAGCACCAACCCTTCAGTGGTACTGTTCGGAAGAGTGGAGTTGA 1017 0.5015 MKRLSSSDDSLGALMTICPSSTTEEHSPRNKQQVYGREFQSMLDGLDEDGCIEESGHHGEKKRRLSVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNFEKLQQDNQALHKEIKGLKSRMQDERTESDASVKKEQVEMITTLQDSEENPCDLETAAAIAGSDSNKDLSYDCFNKGDGEGGDGVGGAASISLFPCGDLKDGSSDSDSSAILNEENNNSSCSPMNNAAMSSCGGGVLQSSNLLMSQHDESPSSMSCFQFQKAYQATQYVKMEEHNFFSADETCNFFSDEQAPTLQWYCSEEWS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3803 338 Coils Coil 115 163 - -
Ahy3g3803 338 MobiDBLite consensus disorder prediction 9 33 - -
Ahy3g3803 338 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Ahy3g3803 338 SMART HOX_1 59 120 IPR001356 GO:0003677
Ahy3g3803 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 330 IPR045224 GO:0003700
Ahy3g3803 338 MobiDBLite consensus disorder prediction 1 33 - -
Ahy3g3803 338 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Ahy3g3803 338 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Ahy3g3803 338 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Ahy3g3803 338 SUPERFAMILY Homeodomain-like 44 118 IPR009057 -
Ahy3g3803 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 330 - -
Ahy3g3803 338 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Ahy3g3803 338 Pfam Homeobox associated leucine zipper 116 158 IPR003106 GO:0006355|GO:0043565
Ahy3g3803 338 CDD homeodomain 61 117 IPR001356 GO:0003677
Ahy3g3803 338 MobiDBLite consensus disorder prediction 239 259 - -
Ahy3g3803 338 Gene3D - 55 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3803 Ahy-Chr3 137449507 137451788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3803 1 334 Homeobox Transcription Factor Family AT2G22430 44.290 1.45e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy3g3803 Homeodomain 5.50E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3803 K09338 - gmx:100796213 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4081 13 140303481 140305775 Ahy3g3803 3 137449507 137451788 hybridization
Ahy3g3803 3 137449507 137451788 Ahy20g1116 20 18181020 18185166 PCT
Ahy3g3803 3 137449507 137451788 Ahy10g0817 10 11222632 11225984 PCT