Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3802 ATGAAGCCACACTTTATGCCTCAAACGTTATCCTCTCTTTCGCCGCTCATGGGTTTTCTTCCCAGAAAACTAGTGCTACTGCAACCGCAACTGCAACATCAGAATGAGCATATGATTATGAACACAGTATCACATAGCCCTAGCCCTAGCCCAGGCCCAGGCCCAGGCCCAGCACCTTCTCCTTCCCCTCTTCAATCATCACTGTCACTCCCTATCCCCATCCCGCCAAAGTTCCCTTTCCCTTTAATCCCTATCCGTGATGAAGGGTTTCACGTGCATCTTCTTCAACTTGGCATGATTATCATGGCCGGCACCGTTGGAATCGCGATGCTTCTATGTGCCGTCTCCTTGATCCGAAGGATCTGTTGTTCCCGGAGGCATAACCGCACGGGAGGAAACACGCCTATACTGTTCCATGTTAATGGAGATTCTGCTGTTTCAGGTTCGGATTTCGATGACGATGAGGGAGCCTTGGTTGATCACCCTATATGGTTCATCCGCACCGTGGGGTTGCAGCAATCGGTTATAGATTCCATCACAGTGTTTGTTTACAGAAAAGGCGAGAGGCTAATTGATGGTTCAGAGTGCTCTGTTTGCCTCGCTGAGTTTCAAGAAAACGACTCTCTCAGGCTGTTACCAAAGTGCAGTCACGCCTTTCACATCCCTTGCATTGACACGTGGCTTAGATCGCACAAGAATTGCCCTCTCTGCCGCGCACCCGTTCTTCATGATTCCGGTACCGCAACTTCTGTTAGTACGGAGGTGATAGTTCCCGAGGCTGATTCAAATGGTTCTGGTGAGAATCAAGAGAATGGTGAGAGTAGTTCAGTGAGGAATATTGGAGATGAGGATGATGGGGGTGAAGATGGAGAAACCCTAGAAAAGATGAATAGGCACAGAGATGCTTCGATTACACAACCAATGAGGAGGTCGGTTTCCATGGATTCATCATCCATATTTCGTGATTTGAATTCTGATGATCAAGATGACAAAATCACCAATTCAAGTTCAAGAATATACAAACTGGCTTCAATAGCATTTCAGAAGAGGCCTAGAAGCCCTTTTTCACATAACAGGAAATGCTCCACTTCTACACACTCTAGGAGCCACAGTTCAACTCTCCCTTTGTAG 1131 0.473 MKPHFMPQTLSSLSPLMGFLPRKLVLLQPQLQHQNEHMIMNTVSHSPSPSPGPGPGPAPSPSPLQSSLSLPIPIPPKFPFPLIPIRDEGFHVHLLQLGMIIMAGTVGIAMLLCAVSLIRRICCSRRHNRTGGNTPILFHVNGDSAVSGSDFDDDEGALVDHPIWFIRTVGLQQSVIDSITVFVYRKGERLIDGSECSVCLAEFQENDSLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVLHDSGTATSVSTEVIVPEADSNGSGENQENGESSSVRNIGDEDDGGEDGETLEKMNRHRDASITQPMRRSVSMDSSSIFRDLNSDDQDDKITNSSSRIYKLASIAFQKRPRSPFSHNRKCSTSTHSRSHSSTLPL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3802 376 ProSiteProfiles Zinc finger RING-type profile. 196 238 IPR001841 -
Ahy3g3802 376 MobiDBLite consensus disorder prediction 259 276 - -
Ahy3g3802 376 SMART ring_2 196 237 IPR001841 -
Ahy3g3802 376 MobiDBLite consensus disorder prediction 291 305 - -
Ahy3g3802 376 CDD RING-H2_PA-TM-RING 195 238 - -
Ahy3g3802 376 MobiDBLite consensus disorder prediction 344 376 - -
Ahy3g3802 376 MobiDBLite consensus disorder prediction 259 332 - -
Ahy3g3802 376 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 62 338 IPR044675 -
Ahy3g3802 376 SUPERFAMILY RING/U-box 184 246 - -
Ahy3g3802 376 MobiDBLite consensus disorder prediction 41 66 - -
Ahy3g3802 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 246 IPR013083 -
Ahy3g3802 376 Pfam Ring finger domain 195 238 IPR001841 -
Ahy3g3802 376 MobiDBLite consensus disorder prediction 357 376 - -
Ahy3g3802 376 MobiDBLite consensus disorder prediction 48 66 - -
Ahy3g3802 376 PANTHER RING-H2 FINGER PROTEIN ATL54 62 338 - -
Ahy3g3802 376 MobiDBLite consensus disorder prediction 306 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3802 Ahy-Chr3 137430323 137431767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3802 94 288 C3H Transcription Factor Family AT1G72220 45.128 9.55e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3802 - - adu:107481823 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4080 13 140282348 140284008 Ahy3g3802 3 137430323 137431767 hybridization