Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3685 ATGCGTGTTGTTACAACAGAGGCACCAACAACAGTGGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTGAGCCAGCGCAACCACATCATTGCAGAAGAAACAGATCCAAGGCCACAAATTCAATCCACAAGGTGCAAGTCCACCATTTCCTCCATGCTCCTCTCCACATTCTCCAACAACAGCAATGATGGCGGGTCACAGAGCAGGAAAAAGAGCAACTTTTCAGCAGCAGCGACGTTGAGGGGGCTGGGGTGCACGGCGGGGGCGCCGCAGGAGGTATCGGTGCCGGCGGTGATTCGAAACTCGGCGGAATGGGAAGGAAAGAAGGTGAGAAAGAAGAAGCACAAGAGAAGCAGCAAGGGAAGCTGCAGCAATAATGGCGTGGATGTGGATTTTCAAGATGTGTGGTGTGGCACCGCACACGGAATAGGGTTCTCTGCCGATTGTGTTGTTGGCACTTCCAGGAAGAATGCCTCTTCTTCTTCACGACCCAAAATTGATGTTCACAAAATCAATCACAGACAGCGTTCATCTTCTTGTTTGGGAAGGCGCAGTGTGAACCCAGAAACCATCTCGCTTCTCGACACTGATCCTAGCGACGTCTTCACTCCGCGCTCTGCCTCCTCCGAGTTCGCATACTATCGCCATCTTCCAGATCCTTCCACCGATGCTTTTCCTGAGATTATGATGCTTCAAGGAGGTATAATCATGGGGAGTAGATACTCACACGATCAATTCAGAGATTTGAGACTTGATGTTGATAACATGTCCTATGAACAATTGCTTGAGCTCGGTGAGAGAATTGGTTATGTCAACACTGGACTTAAAGAAAATGAGATGGGTGGCAACATAAGGAAAACTAAGCTTCAAATTTCAGATGATGCATCAAACCATCAAGTAGATAAAACGTGTACCATTTGCCAGGAGGAGTATGAAGCTGCTGATGAATTGGGGAGGTTACATTGTGAGCACAGCTATCACTTCCACTGTATAAAACAATGGGTTGCTCACAAGAATTTCTGTCCAGTGTGTAAGCAACAAGTTGTGGCTCGCAACAATTGA 1068 0.4747 MRVVTTEAPTTVAEHIKWRRPRNQLSQRNHIIAEETDPRPQIQSTRCKSTISSMLLSTFSNNSNDGGSQSRKKSNFSAAATLRGLGCTAGAPQEVSVPAVIRNSAEWEGKKVRKKKHKRSSKGSCSNNGVDVDFQDVWCGTAHGIGFSADCVVGTSRKNASSSSRPKIDVHKINHRQRSSSCLGRRSVNPETISLLDTDPSDVFTPRSASSEFAYYRHLPDPSTDAFPEIMMLQGGIIMGSRYSHDQFRDLRLDVDNMSYEQLLELGERIGYVNTGLKENEMGGNIRKTKLQISDDASNHQVDKTCTICQEEYEAADELGRLHCEHSYHFHCIKQWVAHKNFCPVCKQQVVARNN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3685 355 SUPERFAMILY RING/U-box 305 351 - -
Ahy3g3685 355 SMART ring_2 306 346 IPR001841 -
Ahy3g3685 355 Pfam Ring finger domain 305 347 IPR001841 -
Ahy3g3685 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 352 IPR013083 -
Ahy3g3685 355 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 353 - -
Ahy3g3685 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 353 IPR045191 GO:0061630
Ahy3g3685 355 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3685 Ahy-Chr3 136167998 136170490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3685 12 261 C3H Transcription Factor Family AT1G73760 39.858 1.30e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3685 - - gmx:100788837 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3958 13 138972810 138975319 Ahy3g3685 3 136167998 136170490 hybridization