LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy3g3670	ATGGTGGCGAAATCAGGCGAGAATGGCTGTGTGGCTCCGTTCCTTCAGAAGTGCTACGATATGGTCTCCGACCCTTCCACCGACTCCGTCATCTCTTGGACCCATCAAGGCCACACCTTCCTCATCTCCGATATCACCCAATTCTCCCTCACTCTTCTCCCCAATTACTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAACATCTACGGCTTCAGGAAAATTGATACGGACCGCTGGGAATTCGCCAATGACAACTTTGTGAAGGGTCAAAAGCATTTGTTGATCAATATTCGGAGAAGGAAACATCCGCACGCTGCAGATCATCAAAAGCCAGACAATTCTGATGAAGCAGCAGCAAATGATGGGCTTTGGAAGGAAGTGGAGAATCTAAAATCCAACAAGAATTCCCTCATGCAGGAGTTGGTTAAACTCAGGCAGCATCAAGAATCTGCCGAGAATAAGCTGCTACTCCTCACTGATCGCCTTCAAGGAATGGAGAAGCATCAGCAGCAGATGCTATCATTCTTGGTCATGGTTGTTCAAAGTCCCGGCTTCATGGTTCAACTCCTTCAGCCTAACGAAAACAATTGGCGAATGGCCGAACTTGGAGATGGGAATGGGATGATAGTAAAGTATAAACCTCCGGTGCCCGAAAATCTCAAGCCTGTAGTTCCCCGATCACCCACTTTCGAGAAGCAACCGGAACCTGAGCTTTCTTTCGATGGTTTAAAAGACTTGTGCATCAGTTCTGAGTTCTTGAAAGTTCTTATGGATGAGAAGTTGTCTCCTTTGGAAAATCATCCTCCATTTCTTCTTCCGGATTTACCCGATGATGGTTCATGGGAGCAACTTTTTCTTGGCAGTCCTTTCTTGCAAAACACTGATGAAGCTGACAAGCCCACTGTCAGCGGAATGGAGATAGAACCCATCACACCCGAAGATCAAACTGAAAAGTCTCAGTCTTTTGAATCTTTGATTCTAGAAATGGAGAAAACTGAAGAGACCGATGCATTGGAATTACGAGCTGATGGAGTTCATTTGGAGGGGTCGGAGAAACTGAAATCTCTAACCAAGCAAATGGAACTTCTGGCTTCTGAAACTGACAATGAAGAGGAGGAGGAAGAGGAAGGAAGGAAGTGA	1149	0.4613	MVAKSGENGCVAPFLQKCYDMVSDPSTDSVISWTHQGHTFLISDITQFSLTLLPNYFKHNNFSSFIRQLNIYGFRKIDTDRWEFANDNFVKGQKHLLINIRRRKHPHAADHQKPDNSDEAAANDGLWKEVENLKSNKNSLMQELVKLRQHQESAENKLLLLTDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLQPNENNWRMAELGDGNGMIVKYKPPVPENLKPVVPRSPTFEKQPEPELSFDGLKDLCISSEFLKVLMDEKLSPLENHPPFLLPDLPDDGSWEQLFLGSPFLQNTDEADKPTVSGMEIEPITPEDQTEKSQSFESLILEMEKTEETDALELRADGVHLEGSEKLKSLTKQMELLASETDNEEEEEEEGRK*	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy3g3670	382	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy3g3670	382	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	1	313	IPR027725	-
	Ahy3g3670	382	SUPERFAMILY	"Winged helix" DNA-binding domain	11	103	IPR036390	-
	Ahy3g3670	382	MobiDBLite	consensus disorder prediction	345	382	-	-
	Ahy3g3670	382	Gene3D	-	7	104	IPR036388	-
	Ahy3g3670	382	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-8	1	313	-	-
	Ahy3g3670	382	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy3g3670	382	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy3g3670	382	Coils	Coil	130	157	-	-
	Ahy3g3670	382	Coils	Coil	356	376	-	-
	Ahy3g3670	382	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy3g3670	382	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy3g3670	382	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy3g3670	Ahy-Chr3	136037791	136039435	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy3g3670	11	368	HSF	AT1G67970	45.504	3.88e-95	287

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Ahy3g3670		HSF_DNA-bind	6.10E-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy3g3670	K09419		-	gmx:100813694	494.582