LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy3g3659	ATGGCTGAGCGCGGTGGCGGAGATCGTGGCGGATTCGGGCGTGGCTTCGGAGGTCGCGGTGGTCGGGGCGACAGGGGCCGCGGTGGGCGTCGTAGGGGCGGTGGACGCCGCGAGGAAGAGGAGAAGTGGGTTCCAGTCACGAAGCTGGGTCGCCTCGTGAAAGATTCAAAGATCAGTAGCCTCGAACAAATCTACCTTCACTCTCTCCCAATCAAGGAGCACCAAATCGTTGACCAGTTGGTTGGTCCTTCTTTGAAGGATGAAGTCATGAAGATCATGCCCGTTCAGAAACAGACACGTGCCGGTCAGAGAACCCGTTTCAAGGCCTTCGTTGTCGTCGGTGACAACAACGGCCATGTCGGACTCGGTGTCAAGTGCAGCAAGGAGGTCGCAACCGCCATTCGCGGTGCCATCATATTGGCGAAGCTTTCGGTGATTCCTGTTAGGAGAGGTTATTGGGGTAACAAGATCGGAAAGCCACACACCGTTCCCTGCAAGGTCACCGGGAAATGTGGTTCCGTCACCGTCCGTATGGTGCCTGCTCCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCCAAGAAGGTCTTGCAATTTGCAGGGATTGATGATGTATTCACTTCTTCTAGAGGATCCACCAAGACCCTTGGAAATTTCGTGAAGGCCACATTCGAGTGTTTGCTGAAAACCTACGGTTTCCTTACACCTGATTTCTGGAGGGAGACTCGCTTCTCCAAGTCTCCATTCCAAGAGTACACTGATTTCCTTGCCAAGCCAACGGCCAAGGCCCACATCTTGGAGGATGAAAAGGTCGAGGCTTAA	822	0.5426	MAERGGGDRGGFGRGFGGRGGRGDRGRGGRRRGGGRREEEEKWVPVTKLGRLVKDSKISSLEQIYLHSLPIKEHQIVDQLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFSKSPFQEYTDFLAKPTAKAHILEDEKVEA*	274

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy3g3659	273	ProSiteProfiles	S5 double stranded RNA-binding domain profile.	85	148	IPR013810	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Ahy3g3659	273	MobiDBLite	consensus disorder prediction	20	41	-	-
	Ahy3g3659	273	PANTHER	40S RIBOSOMAL PROTEIN S2-1-RELATED	1	271	-	-
	Ahy3g3659	273	TIGRFAM	uS5_euk_arch: ribosomal protein uS5	38	245	IPR005711	GO:0003735\|GO:0006412\|GO:0015935
	Ahy3g3659	273	Pfam	Ribosomal protein S5, N-terminal domain	85	149	IPR013810	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Ahy3g3659	273	Gene3D	-	42	147	-	-
	Ahy3g3659	273	PANTHER	RIBOSOMAL S SUBUNIT	1	271	IPR000851	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Ahy3g3659	273	Gene3D	-	148	240	IPR014721	-
	Ahy3g3659	273	SUPERFAMILY	dsRNA-binding domain-like	81	150	-	-
	Ahy3g3659	273	Pfam	Ribosomal protein S5, C-terminal domain	169	240	IPR005324	GO:0003735\|GO:0005840\|GO:0006412
	Ahy3g3659	273	MobiDBLite	consensus disorder prediction	1	41	-	-
	Ahy3g3659	273	SUPERFAMILY	Ribosomal protein S5 domain 2-like	161	241	IPR020568	-
	Ahy3g3659	273	ProSitePatterns	Ribosomal protein S5 signature.	102	134	IPR018192	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy3g3659	Ahy-Chr3	135908067	135909474	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy3g3659	39	272	Cytoplasmic Ribosomal Protein Gene Family	AT3G57490	86.017	4.03e-151	421

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy3g3659	K02981		-	gmx:100797105	458.759

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy13g3931	13	138713127	138714535	Ahy3g3659	3	135908067	135909474	hybridization