Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3602 ATGGTGAATAAAAGAAAAGAGAGGGAAAGTGAAGAAGGAGTGGGAACTAAGAACACTGAAGAATTGAGCAATGAGTGGGAGCAGATAAGGGAGGAGGCTGCATCAGTGGCAGCTGCACTACTTGGAGCAAGAAGAGCAAAGAAGCGCTACATTGGCGTGCGCCAACGTCCTTCAGGGCGATGGGTGGCCGAGATCAAAGACACCATACAGAATATTAGGCTGTGGTTAGGCACCTACGACACTGCTGAAGATGCTGCTAGAGCTTATGATGAGGCTGCTCGCTTGCTTCGCGGCGCTAATACCCGCACTAATTTCTTTCCATCACAAGATCCTAATTCTGTTCCAGCTCTTCCTCCAAAGATCGCGAAGCTCCTCCTTCTTAGGCTCAAAGCTAGAAGCATTTCCTCTTCTTGCATGGTTACTACTTTTCCTAGTAACCATTTTGAGCAAGAAAAAAAGGCCGAACCAGAACCAGAACCAGAGCTAGAACTAGAACCAAAACCAGAACCACTTTTTTCTAAACTAATAGAAGAACAAACATACCAATTAGAAAATTTTCTAGATATTGAGGGATATGGGGCTGTTGGAGAGAATTATGATGGTGCTAGTTATGGTTCTGCTGCCACAACTAGTTGTGACTGTAGTACCATTACTTGTGACTATGGTGGAACTAACAATGTAGCAAATTTTGACCAAGAGGTTTGCATGGAAAATTTCAAGATGGAGGATGGTTGTGCTAACAATGTTGATGATGGAAGAAACAATCAAATTGTTAGGCCCAAAGGAGAATTTGAAGACTGCAATGCTGGTTTCATAGACTTCCACTTTTTGGACACTGTTGGATCATTGGTTTGCTCTTCTTCTCCTTTTGAAATAACTGAGGAAATGGTAGGGCCAATGGCGGAAGAGAATTATGATGTGGATGATTCACCATTGCTTAGGATGAAGTATGAAAGAAAATTCTCAGCATGTCTTTATACATTCATTGGTGTTGGTGAGTGTTTGAGGCTGCAGGATCGACCTGAATAG 1029 0.4286 MVNKRKERESEEGVGTKNTEELSNEWEQIREEAASVAAALLGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFPSQDPNSVPALPPKIAKLLLLRLKARSISSSCMVTTFPSNHFEQEKKAEPEPEPELELEPKPEPLFSKLIEEQTYQLENFLDIEGYGAVGENYDGASYGSAATTSCDCSTITCDYGGTNNVANFDQEVCMENFKMEDGCANNVDDGRNNQIVRPKGEFEDCNAGFIDFHFLDTVGSLVCSSSPFEITEEMVGPMAEENYDVDDSPLLRMKYERKFSACLYTFIGVGECLRLQDRPE* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3602 342 CDD AP2 48 105 IPR001471 GO:0003700|GO:0006355
Ahy3g3602 342 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Ahy3g3602 342 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Ahy3g3602 342 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Ahy3g3602 342 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Ahy3g3602 342 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 341 - -
Ahy3g3602 342 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 341 - -
Ahy3g3602 342 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Ahy3g3602 342 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Ahy3g3602 342 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Ahy3g3602 342 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3602 Ahy-Chr3 135328785 135329813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3602 47 108 AP2-EREBP Transcription Factor Family AT5G19790 73.846 3.26e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy3g3602 AP2 4.60E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3602 K09286 - gmx:100793940 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3873 13 138199983 138201053 Ahy3g3602 3 135328785 135329813 hybridization