Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3574 ATGGACTTGACCTCAAACAATACCCACACCTTAGATTCAGATACTAAAACCCCACCACCAACCCAACCCACCAACACCAACACCCTAAAGTCACTATCTTTAACCAACGGCACACACAACAACAACCACCACCGCCACCAGTCCACCACCAGGCTTCCTCCGCCGTCCATGGCGGTTATTTCCTACAAAGAATGTCTCAAGAACCACGCCGCCAGCATAGGTGGCCATGCACTTGACGGTTGCGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGACCCTCGCTCCCTCAAGTGCGCCGCCTGCGGCTGCCATCGCAACTTCCACCGCCGTGACCCTCCAGAGCCTTCCAGCACCACCACCCCCACCTTTTTAAACTGCTTCTACTCCCCGTCCACCGGCACCACCACTGCACCACCACCGGCGCCGCCGCAACCTCTCCCTCATCGCGGCATGAGCCAAAGTACAAGCCCAAGCCAAAGCTCAAGCCCAAGCCAGAGCCCTAGCCCGATGTCAAGCCCTTCTTCACCGCCACCACTGTCTCACGTGCCACCACCACCACCACCATCAGCACCAGGTTCTTACCACTCCTCCGCACCGCACATGCTCTTAGCCTTAGGCACCGCGTATTCTGCAGTTCCTTCAGATCACGAGCACCAACAGCTTCACCGAAACTCCTTCAACAACAGCAACAACTTCTCCCCTGTGGTTCTGAACGCCAACAGTGGCGGCAGTAATAGTAATAGCAGTAAGAACAAGAGGTACAGAACCAAGTTCAGCCAAGAACAGAAGGAGAAGATGTACAGATTCTCTGAGAAATTGGGTTGGAGAATGAACAACAAAGGTGATGATTCTCTTGTTCAGGAGTTTTGTAATGACATTGGTGTCCCTAGAGGTGTCTTCAAGGTTTGGATGCACAATAACAAGAACACTTTCAACAAGAAGAGATCCTCTTCTTCCGAACCTCCTCTTCCTCCTCCTGCTGCTGCTGGAAACAACCACATCAATGATCATGATCAGAAAATCAATGCTACTGCTGCTGCTGATGGTAGTAATAATAATAATAAGAATGGAGATATCAATAATGTTGTTTCTCATGTTCCTATCAATGCCTTGTCATCTTAA 1128 0.5124 MDLTSNNTHTLDSDTKTPPPTQPTNTNTLKSLSLTNGTHNNNHHRHQSTTRLPPPSMAVISYKECLKNHAASIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPPEPSSTTTPTFLNCFYSPSTGTTTAPPPAPPQPLPHRGMSQSTSPSQSSSPSQSPSPMSSPSSPPPLSHVPPPPPPSAPGSYHSSAPHMLLALGTAYSAVPSDHEHQQLHRNSFNNSNNFSPVVLNANSGGSNSNSSKNKRYRTKFSQEQKEKMYRFSEKLGWRMNNKGDDSLVQEFCNDIGVPRGVFKVWMHNNKNTFNKKRSSSSEPPLPPPAAAGNNHINDHDQKINATAAADGSNNNNKNGDINNVVSHVPINALSS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3574 375 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 113 IPR006456 -
Ahy3g3574 375 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 44 321 - -
Ahy3g3574 375 MobiDBLite consensus disorder prediction 215 264 - -
Ahy3g3574 375 MobiDBLite consensus disorder prediction 150 170 - -
Ahy3g3574 375 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 321 - -
Ahy3g3574 375 MobiDBLite consensus disorder prediction 225 255 - -
Ahy3g3574 375 MobiDBLite consensus disorder prediction 1 55 - -
Ahy3g3574 375 Gene3D - 239 316 - -
Ahy3g3574 375 MobiDBLite consensus disorder prediction 115 136 - -
Ahy3g3574 375 MobiDBLite consensus disorder prediction 171 195 - -
Ahy3g3574 375 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 113 IPR006456 -
Ahy3g3574 375 SUPERFAMILY Homeodomain-like 240 315 IPR009057 -
Ahy3g3574 375 MobiDBLite consensus disorder prediction 312 338 - -
Ahy3g3574 375 Pfam ZF-HD protein dimerisation region 60 113 IPR006456 -
Ahy3g3574 375 MobiDBLite consensus disorder prediction 109 199 - -
Ahy3g3574 375 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 254 311 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3574 Ahy-Chr3 134879736 134881502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3574 60 313 ZF-HD Transcription Factor Family AT1G69600 43.359 2.81e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ahy3g3574 ZF-HD_dimer 3.20E-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3574 - - gmx:102660309 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3841 13 137758956 137761105 Ahy3g3574 3 134879736 134881502 hybridization