Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3570 ATGGAAGGTGAGAAGCTTGATGAGATCATGTTACCAGGTTTCAGGTTCCACCCAACTGATGAGGAGCTTGTCGGGTTCTACCTTAAGAGAAAGATTCAGCAAATGCCTCTGTCCATTGAGCTCATCAAGCAACTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAAGTGGCAGGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGGAACAGTGCAAGGCCAAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCCACAGGGACTGACAGGCCTATATACTCCTCAGAGGGTTCAAAGTGCATTGGACTCAAGAAATCTTTGGTCTTCTACAAAGGCAGAGCTGCCAAAGGTGTTAAAACTGATTGGATGATGCATGAGTTTAGGCTCCCTTCTCTTGTTGACTCTTCTTCATCCGACAAGACCACTATTCCTGCTAATGACTCTTGGGCAATCTGCAGAATATTCAAGAAAACAAATGCTACAGCTCAAAGAGCACTCTCTCACTCTTGGGTTTCTACCTTACCTGAAACAACACCAACCACCACTACCAATGATACAGATCACATATTCCAGTTTTGTTCATCCAACATGCCAGCAATGATGGCAAAGAAAACTAGCTTCATGACCCAGTTTTGCACTAACTACACTAGTGACACACAAATCCAAGATGTTGCATCATCTTATAAACCACCCTTTATTAATATTAATCCATTTCTTTACAAACACTTTGATCATCATCATCATCAGCTACCACCCATTATTTCAAATGGAGATCTTATAAGCAACGACTGTTTAATACCCTCTTCTACTACTCCACTTGAAACATCCTCTAATAGTGCAAAACCTACTATGGATTTTTCTTCATTGTTGCTGAACATGTCATCTTCTGTTCTTGGAGATTTTGCTGGAAAGACATCATCGTCGTCGTCATCCCAAGAGGGTACAGCAGCAGCAGCAACAGCAACAACAATCACAAGTAGCTTCGGTGGTGGAATGCAGGAGCACTACCCAACAATACCATTACTGCGTCAGATGCATCAAGGGAACAACAACAACAACAACAACATTGGCATCAACAACAACAACGTGTCTGCTGGCGGTGAAGAACAAGAGTTGGAGAAAGTTGGATCCATTGTTGGGTTCCCATTCATGAACATTGGGGATGCATGGAAGTCAAATATGCTTTGGGATACTTCTTGTCCCTTGTGA 1233 0.4234 MEGEKLDEIMLPGFRFHPTDEELVGFYLKRKIQQMPLSIELIKQLDIYKYDPWDLPKVAGTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLVDSSSSDKTTIPANDSWAICRIFKKTNATAQRALSHSWVSTLPETTPTTTTNDTDHIFQFCSSNMPAMMAKKTSFMTQFCTNYTSDTQIQDVASSYKPPFININPFLYKHFDHHHHQLPPIISNGDLISNDCLIPSSTTPLETSSNSAKPTMDFSSLLLNMSSSVLGDFAGKTSSSSSSQEGTAAAATATTITSSFGGGMQEHYPTIPLLRQMHQGNNNNNNNIGINNNNVSAGGEEQELEKVGSIVGFPFMNIGDAWKSNMLWDTSCPL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3570 410 ProSiteProfiles NAC domain profile. 10 165 IPR003441 GO:0003677|GO:0006355
Ahy3g3570 410 Gene3D NAC domain 19 170 IPR036093 GO:0003677|GO:0006355
Ahy3g3570 410 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 408 - -
Ahy3g3570 410 PANTHER PROTEIN FEZ ISOFORM X1 2 408 - -
Ahy3g3570 410 Pfam No apical meristem (NAM) protein 12 137 IPR003441 GO:0003677|GO:0006355
Ahy3g3570 410 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3570 Ahy-Chr3 134841007 134843085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3570 4 190 NAC Transcription Factor Family AT1G26870 79.581 2.43e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy3g3570 NAM 7.00E-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3570 - - gmx:100815365 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3837 13 137702206 137704060 Ahy3g3570 3 134841007 134843085 hybridization