Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3558 ATGAGTGAGAAAACGATCATGGAGCCTGACCACCATCAAAATGGGATCCGCACCAGACCTAATTTTCCACTCCAACTCTTAGACAATAAGAAAGATGATCTTCAGCAACCGCCGCCATCAGAGGATGGACCCGCCGCTGCTGCCAAGAAGCTGCCGCCAAAGCGAGCTTCCACAAAAGACAGGCACACCAAGGTCGACGGTCGCGGCCGACGGATCCGTATGCCGGCTGCAGCCGCTGCCAGGGTGTTCCAGCTGACGAGGGAGCTTGGCCACAAGTCTGACGGGGAGACCATCGAGTGGCTCCTCCAACAGGCTGAGCCCTCCGTCATCGCGGCCACCGGAACCGGTACTATCCCTGCAAACTTCACTTCCCTCAACATCACGCTTAGAAGCTCAGGATCCACCATCTCTTCCCCCTCTCACTACTTCAGAGGCGCCACCGCCACCGCTACACCGTACCTTAGCCACGCAGCCAGCTTCTCCGCCGCTAGGAGCCGCAGCGAATGGGTGAGGAACGTGGCGGTGGAAGATTATTCTAGAAGAGTCATGTTCTCCGGCAGTGACAATAGTAATAATAATAACAACAACAACTCTGCTGCTGCTGCTACTACTGTCTTGAATTTCAACAACGCTGTTAATGATATTATGCAAAGCAAGCAAGAGGCTCGGGAAGAGCCCTGTAGCGGTGACGGTGGCGGCGGAGGAGATGCTTTGGGGAGGAAGAGAAGGCAAGAGGAGGTGTTCTCACAGCACCAGGGTACTCAGATGATGGGTAGCTACTTGTTACAGTCGAGTTCAGGGTCAATTCCGGCGACTCATGCTTCTATTCCGGCGACTTTTTGGATGATGGGCGGCGGTGGAGTTGGTGGTGGCAGTGGTAATAATGGCGGTGACCCAATTTGGGCAATTCCAACCGTTGGTAACAATAGTAGCATGTATAAAGGGGCTATGTCTGGTGGCAACGGTAACGGTGCCGGCGGCATTCATTTCATGAATTTTGCTTCTCCAATGGCTCTATTGCAAGCTCAACAACTAGGAGGAGGAGGAGGAGGAGGCGCCGGCGGCAGTGCAGTGCTGAGTGAAAGTAACCTGGGAATGCTTGCAGCTCTTAATGCATACAGGCCTATTATGGCTAACGGCAGCGGCGGCCAACATTCACCCCATGGAGATGGAGGAGATCAAGAAAGTCAACCCTGA 1197 0.5405 MSEKTIMEPDHHQNGIRTRPNFPLQLLDNKKDDLQQPPPSEDGPAAAAKKLPPKRASTKDRHTKVDGRGRRIRMPAAAAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNITLRSSGSTISSPSHYFRGATATATPYLSHAASFSAARSRSEWVRNVAVEDYSRRVMFSGSDNSNNNNNNNSAAAATTVLNFNNAVNDIMQSKQEAREEPCSGDGGGGGDALGRKRRQEEVFSQHQGTQMMGSYLLQSSSGSIPATHASIPATFWMMGGGGVGGGSGNNGGDPIWAIPTVGNNSSMYKGAMSGGNGNGAGGIHFMNFASPMALLQAQQLGGGGGGGAGGSAVLSESNLGMLAALNAYRPIMANGSGGQHSPHGDGGDQESQP* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3558 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 46 395 IPR005333 GO:0003700
Ahy3g3558 398 MobiDBLite consensus disorder prediction 1 15 - -
Ahy3g3558 398 MobiDBLite consensus disorder prediction 219 252 - -
Ahy3g3558 398 ProSiteProfiles TCP domain profile. 58 112 IPR017887 -
Ahy3g3558 398 Pfam TCP family transcription factor 57 223 IPR017887 -
Ahy3g3558 398 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 46 395 - -
Ahy3g3558 398 MobiDBLite consensus disorder prediction 1 66 - -
Ahy3g3558 398 MobiDBLite consensus disorder prediction 378 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3558 Ahy-Chr3 134656921 134658908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3558 41 344 TCP Transcription Factor Family AT3G47620 45.133 9.77e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy3g3558 TCP 5.70E-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3558 - - aip:107633962 608.986