Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3556 ATGGCTGATCCTCAGAAAGCTGGTCCTGTTGAGAGGGATATAGAGCAGGCACTTACATCGCTTAAAAAAGGATCATATCTGCTAAAGTATGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGATGAGTCTCTACTCTTGTGGTACTCTGGAAAGGAAGAGAAACAACTTAAACTCAGTACTGTTTCAAAGATCATTCCAGGACAACGAACTATATGTAAGGACAAAGAGGAGGCTGAGATATGGTTTGTCGGTCTTAAGGCATTAGTTACTCGAGGTAATACCAACAGTCAAACGTGGAAATTCGAACCATGTGAAAGTCCATATCCTGGAAGTCCCCGTGCTGGCACACGCAAATCTGCTCCATCAAGTTCACCATTTGACCCCAGATATACCAATGGAGTTGCTTCAGACAATTCTAATCAAAATAGATGGGTAAAGGCTTTCTCGGAAATTATTTCTTATACTGGAGCTAACAAGAGTTCAATTCAAGTCGAGTTGATTCCGAATTCCACTTTGTCTCCTGGGTCTGTGGATGAATCAAGTAATCGAAACTCTGCATCTGAGGCAGTTCGAGTTAGTTTATCCAGTGTTGTTAGTTCATCTAGCCATGGTTCTTGTCATGAGGATTTTGAGGCCTTAGGTGATGTTTTTATTTGGGGAGAAGGTATTGGTGATGGAATTGTTGGTGGTGGTGTGCGTAGAGTTGGAACCATATCCAATTCTGAGATGGATGCATTCCTCCCTAAGGCTTTGGAATCAAAAGTAGTTCTAGATGTTCATAGTATCAGTTGTGGCCACAAACATGCTGTTCTAGTTACCAAGCAAGGAGAAATATTTAGTTGGGGAGAGGAATCAGGAGGTAGACTTGGACATGGTGTAGAAGTGGATGTTCTTCACCCTAAGCCCATTGAAACTCTTAGCGGCATTAATATAGAATTAGTAGCATGTGGAGAATATCATAGTTGTGCTGTTACGTATTCTGGGGATCTTTATACTTGGGGCGATGGTACTCACAACTCTGGCTTGCTTGGGCATGAAAACAATGTCAGTCACTGGATTCCTAAGAAAGTAGGTGGTAGCTTGGAGGGTTTACATGTATCATATGTGTCCTGTGGCCCATGGCACACAGCTATTGTTACATCAGCTGGACAGTTGTTTACATTTGGGGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCTCAATAGCACAAATATTCCTAGAGAAGTGGAAGCTTTGAAGGGGTTGAGAACAACCAGGGTTTCCTGTGGTGTTTGGCACACTGCTGCAATTGTTGAGGTAACACACAAATCTAAGGAATCTCCTACACACTCTACTATTGGAACACTTTTCACCTGGGGTGATGGAGATAAATTGCAACTTGGACATGTTGGTAGTGAACCTACACTAGTTCCTGAGCGTGTGATTGCATTGGATAATGAAAACATTTGTCGAGTGGCTTGTGGCCACAGTCTTACAATTGCATTGACAACCTCAGGACATGTATATACAATGGGTAGTACAGCTTATGGACAACTTGGCTGTCCTGCAGCTGATGGAAAAGTCCCCACACGTGTTAAAGATCAACTTGCTGACTGTTTTGTGGAAGATATTGCCTGTGGTTCTTATCATGTTGCAGCCCTAACTTCAAAAGCAGAGGTTTATACTTGGGGAAAAGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACCGGAATAAACCCACTCTTGTTCAGTTTTTGAAAGACAAGCAAGTGAAAACCATCGTTTGTGGTTCAAACTTCACTGCTGTTGTGTGTATTCATAAATGGGTATCAAGCACTGACCATTCTCTATGTTCTGGTTGTCGTAATCCATTTGGATTCAGAAGAAAACGTCATAATTGTTACAACTGTGGGCTTGTTTTTTGCAAAGGATGCTCAAACAAGAAATCTATAAAAGCTTCCCTTGCTCCAGACTCCAACAAGCCATATCGGGTTTGTGATGATTGTTACTCTAAACTTAAGAAAGCTTCAGAAACAGTTCCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCATGACAACAGTAAGGTCACTAAATTACAGGAAAAGCTATTAAGGCTTTCATCCTTTGGTTCTTTTACTCAATCAGAAAGCAGTCCATCAAAACCTCCAGAATCACATGATACCCATGTTTTTCCATCTTTGAATGGAAAATTGCATGTGGGGATTTATGGTCCTATAAAATCATCAAATACTCCTTCTCTGGTATCTAAGAAAAACATTTCAGTTTCTGAGCCTGCTGCAAGAATCTCTTGCCAATCAACATCACCGGCTTCTTCAAAGTGTAGCCCACGACAATCTTGTGAAGATAACCATGATGATCCAAAGCTCAAAAATGACATTCTAACTCAAGAAGTCATTGCTTTAAGGGCACAGGTTGAAGAGCTTACTCTTAAGTCGAAAAGTCTAGAGGCTGAACTCGAGCGAACATCACAGCGATTGAAGGAAGTGACAGCAGTAGCTGCAGATGAAGCTGAAAAGTGTAAATCTGCAAAAGAGGTTATAAAATCATTGACTGCTCAGTTGAAGGAAATGGTGCAAGGACCTCCAGAAGGACATAAAGCAAATGCTGACACCATAGCAACTTCCTATGCTGAAACCACTAATAACATTCGAGATCTATCTTTGGTTGAGAACCATACAACAAACACTATAAAGGAATCCAACAGCAATACAGCAAATAGAACATTATCTAATGGTGCCAAAGCACAAAGTGGAAAGGCAGAGCGGGTGGTGCAGGATGAACCAGGTGTGTACATAACTTTGTCTCCGCTGCCAGGTGGAGGTAATGAACTAAAGCGTGTTCGCTTCAGTCGGAGGCATTTTACAGAAGAAGAAGCTGAGAAGTGGTGGGCTGAAAATGGAGTCAAAATACTGGAGCGGCATAACATAGTTTCTTCATAG 2973 0.4191 MADPQKAGPVERDIEQALTSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLSTVSKIIPGQRTICKDKEEAEIWFVGLKALVTRGNTNSQTWKFEPCESPYPGSPRAGTRKSAPSSSPFDPRYTNGVASDNSNQNRWVKAFSEIISYTGANKSSIQVELIPNSTLSPGSVDESSNRNSASEAVRVSLSSVVSSSSHGSCHEDFEALGDVFIWGEGIGDGIVGGGVRRVGTISNSEMDAFLPKALESKVVLDVHSISCGHKHAVLVTKQGEIFSWGEESGGRLGHGVEVDVLHPKPIETLSGINIELVACGEYHSCAVTYSGDLYTWGDGTHNSGLLGHENNVSHWIPKKVGGSLEGLHVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDLNSTNIPREVEALKGLRTTRVSCGVWHTAAIVEVTHKSKESPTHSTIGTLFTWGDGDKLQLGHVGSEPTLVPERVIALDNENICRVACGHSLTIALTTSGHVYTMGSTAYGQLGCPAADGKVPTRVKDQLADCFVEDIACGSYHVAALTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVQFLKDKQVKTIVCGSNFTAVVCIHKWVSSTDHSLCSGCRNPFGFRRKRHNCYNCGLVFCKGCSNKKSIKASLAPDSNKPYRVCDDCYSKLKKASETVPLVQTPSLRSVSLHDNSKVTKLQEKLLRLSSFGSFTQSESSPSKPPESHDTHVFPSLNGKLHVGIYGPIKSSNTPSLVSKKNISVSEPAARISCQSTSPASSKCSPRQSCEDNHDDPKLKNDILTQEVIALRAQVEELTLKSKSLEAELERTSQRLKEVTAVAADEAEKCKSAKEVIKSLTAQLKEMVQGPPEGHKANADTIATSYAETTNNIRDLSLVENHTTNTIKESNSNTANRTLSNGAKAQSGKAERVVQDEPGVYITLSPLPGGGNELKRVRFSRRHFTEEEAEKWWAENGVKILERHNIVSS* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3556 990 MobiDBLite consensus disorder prediction 104 142 - -
Ahy3g3556 990 SUPERFAMILY RCC1/BLIP-II 219 610 IPR009091 -
Ahy3g3556 990 SUPERFAMILY PH domain-like 13 94 - -
Ahy3g3556 990 MobiDBLite consensus disorder prediction 909 926 - -
Ahy3g3556 990 Pfam FYVE zinc finger 609 675 IPR000306 GO:0046872
Ahy3g3556 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 281 332 IPR000408 -
Ahy3g3556 990 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 613 675 IPR017455 -
Ahy3g3556 990 SUPERFAMILY FYVE/PHD zinc finger 609 684 IPR011011 -
Ahy3g3556 990 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 267 277 IPR000408 -
Ahy3g3556 990 ProSiteProfiles BRX domain profile. 931 986 IPR013591 -
Ahy3g3556 990 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 75 - -
Ahy3g3556 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 387 IPR000408 -
Ahy3g3556 990 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 75 - -
Ahy3g3556 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 388 439 IPR000408 -
Ahy3g3556 990 MobiDBLite consensus disorder prediction 121 142 - -
Ahy3g3556 990 Gene3D - 449 621 IPR009091 -
Ahy3g3556 990 MobiDBLite consensus disorder prediction 909 933 - -
Ahy3g3556 990 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 76 984 - -
Ahy3g3556 990 Gene3D - 160 439 IPR009091 -
Ahy3g3556 990 Pfam Transcription factor BRX N-terminal domain 846 869 IPR027988 -
Ahy3g3556 990 PRINTS Chromosome condensation regulator RCC1 signature 333 349 IPR000408 -
Ahy3g3556 990 PRINTS Chromosome condensation regulator RCC1 signature 390 404 IPR000408 -
Ahy3g3556 990 PRINTS Chromosome condensation regulator RCC1 signature 552 573 IPR000408 -
Ahy3g3556 990 PRINTS Chromosome condensation regulator RCC1 signature 374 390 IPR000408 -
Ahy3g3556 990 PRINTS Chromosome condensation regulator RCC1 signature 494 512 IPR000408 -
Ahy3g3556 990 PRINTS Chromosome condensation regulator RCC1 signature 283 299 IPR000408 -
Ahy3g3556 990 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 426 436 IPR000408 -
Ahy3g3556 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 219 280 IPR000408 -
Ahy3g3556 990 CDD PH_PLC_plant-like 12 95 - -
Ahy3g3556 990 MobiDBLite consensus disorder prediction 771 799 - -
Ahy3g3556 990 CDD FYVE_like_SF 619 671 - -
Ahy3g3556 990 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 76 984 - -
Ahy3g3556 990 Pfam Regulator of chromosome condensation (RCC1) repeat 504 553 IPR000408 -
Ahy3g3556 990 Pfam Regulator of chromosome condensation (RCC1) repeat 388 436 IPR000408 -
Ahy3g3556 990 Pfam Regulator of chromosome condensation (RCC1) repeat 558 605 IPR000408 -
Ahy3g3556 990 Pfam Regulator of chromosome condensation (RCC1) repeat 281 329 IPR000408 -
Ahy3g3556 990 Pfam Regulator of chromosome condensation (RCC1) repeat 453 501 IPR000408 -
Ahy3g3556 990 Pfam Regulator of chromosome condensation (RCC1) repeat 332 383 IPR000408 -
Ahy3g3556 990 Pfam Transcription factor regulating root and shoot growth via Pin3 931 985 IPR013591 -
Ahy3g3556 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 453 504 IPR000408 -
Ahy3g3556 990 SMART fyve_4 605 676 IPR000306 GO:0046872
Ahy3g3556 990 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 681 IPR013083 -
Ahy3g3556 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
Ahy3g3556 990 Coils Coil 802 864 - -
Ahy3g3556 990 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Ahy3g3556 990 Gene3D - 13 76 IPR011993 -
Ahy3g3556 990 MobiDBLite consensus disorder prediction 771 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3556 Ahy-Chr3 134637792 134645841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3556 929 987 Major Intrinsic Protein MIP AT1G31880 52.542 7.81e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3556 - - lang:109355968 1276.54