Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3549 ATGGCTTTCTTCCCAGCAAATTTCATGTTACAAACCCCACATCATCATCACCAAGATGAGCATCAACCTCCACCTTCACTCAACTCAATCCTAACTTCATGTGCACCTCAAGAGTACCACCACGGAGCAGGAGGAGGGTATCTAGGGAAAAGATCGATGTCATTCTCAGGGATAGAGGTGGGAGAAGTGGAAGGAAATGGAGGAGAGGAAGAGGTGTCAGATGATGGATCACAAGCAGGGGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAACCAGAGAGGAAAATGCAGCTTGCAAGGGCTCTAGGCCTTCAACCTAGACAGATTGCAATTTGGTTCCAAAACAGAAGGGCCAGATGGAAGACAAAGCAATTGGAGAAGGATTATGATCTTCTTAAGCGCCAGTTTGATGCTGTTAAAGCTGATAATGATGCTCTTCAAGCCCAGAATCACAAGCTTCACACTCAGATAATGGCACTGAAAAGTAGAGAACCAACAGAATCAATAAACCTAAACAAAGAGACAGAGGGATCAAGCAGCAACAGGAGTGACAACAGTTCAGATATCAAGTTGGATATATCAACAAGGACACCTACTACTACTACTACTACTTCAGCCATTGACAGTCCTCTATCCACTCATCAAAACAACAACAATAACAGCAGAACACTGTTTCCATCACCATCAAATAATGCTGCTGCTGCTGCTGCTGCTGCCACTGCCAGGCCAACAGAAGTTGCACAGCTTTTTCAAACCACTCCACATCATCATCATCATCATCATCACATGGTCAAAGAAGAGAGCTTGAGCAACATGTTCTGTGCCATTGATGACCAAACTGGCCTCTGGCCATGGTTAGAGCATCAAAATTTCAATTGA 921 0.4463 MAFFPANFMLQTPHHHHQDEHQPPPSLNSILTSCAPQEYHHGAGGGYLGKRSMSFSGIEVGEVEGNGGEEEVSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAVKADNDALQAQNHKLHTQIMALKSREPTESINLNKETEGSSSNRSDNSSDIKLDISTRTPTTTTTTSAIDSPLSTHQNNNNNSRTLFPSPSNNAAAAAAAATARPTEVAQLFQTTPHHHHHHHHMVKEESLSNMFCAIDDQTGLWPWLEHQNFN* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3549 306 SMART HOX_1 80 141 IPR001356 GO:0003677
Ahy3g3549 306 MobiDBLite consensus disorder prediction 173 247 - -
Ahy3g3549 306 Pfam Homeobox associated leucine zipper 137 177 IPR003106 GO:0006355|GO:0043565
Ahy3g3549 306 CDD homeodomain 82 138 IPR001356 GO:0003677
Ahy3g3549 306 Coils Coil 129 177 - -
Ahy3g3549 306 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Ahy3g3549 306 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Ahy3g3549 306 SUPERFAMILY Homeodomain-like 72 139 IPR009057 -
Ahy3g3549 306 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Ahy3g3549 306 Gene3D - 74 143 - -
Ahy3g3549 306 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Ahy3g3549 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 306 - -
Ahy3g3549 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 306 IPR045224 GO:0003700
Ahy3g3549 306 MobiDBLite consensus disorder prediction 63 85 - -
Ahy3g3549 306 Pfam Homeodomain 82 135 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3549 Ahy-Chr3 134502824 134504443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3549 1 306 Homeobox Transcription Factor Family AT1G69780 57.692 3.56e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy3g3549 Homeodomain 1.60E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3549 K09338 - gmx:100790840 432.95