Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3548 ATGAAGAAACAGGAAGAACAGTGTAACAGAGAATCTAAGAAGAAGGGTCACATTGTAACTTGGACTCAAGAGGAAGATGATATACTGAGAGAGCAGATTGGTATCCATGGAACTGAAAAATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTTTTGTGTGAGGCTCAAAAATTATATGGCAACAGATGGACAGAAATAGCGAAAGTGGTTTCAGGAAGAACGGATAATGCTGTGAAAAATCGCTTCTCTACACTCTGCAGAAAGAGGCAAAAATATGAAGCTTTAGCTAAAGAGAACAGCATTTCATCACACATAAATTCAAATAACAAGAAAATTGTTTTCCAACATGCTTATAATACAGATGCAACATCAGAATCTGCTATATCTATCAAGAAAATGAGGAGGGCTCATATCACGGATGATGGAGGGAAGATCAAGTTTGGAGATAGATCACATTTGCGAAATGGAACTTTGATAAATCAGCATCCAAGGACACCATTCGCAGTATTAGCTCAAAACTCACAAAACATAAACAATTTGCTAGACGAGCTTCAAATTTGCAATGCCAAGTTTAGTAGTTCTGCTCAAAATAATAAAACTCAAGGAACATTTCTAAAAAGGGATGACCCAAAAATAGATGCATTAATGCAACAAGCAGAGTTGCTTAGCTCACTAGCTCAAAATATTGATACAGAGGACATGGACCAAAGTCTTGAAAACACGTGGAAGGTTCTTCAAGAGTTTTTGAACCGAACCAAAGAAGCAAACAATTTGAAATGCAAGATTCAAGGTTTAAAGCTTGCTGATCTTAAAAATATGGTTGAAGACTTGAGTAGTAATGAGGGAGGCCAGCCATGTTGGAGGCAAATGGATCTGTATGAAGACTCTCCAGCCAGTTCTGAATACAGTACAGGATCAACTATCCTCCCTCTCTCAGCTGGTGACATTATGGAACACTCTTCACACCGGGATATAAAAACTGAAATGAAAACCACACAAATTGAAGATAAGAAAGAAGTAGATGGATGTGAGAGAGGTGTTCTAGTTACTGCAACCTTGGATCAAGTAGATATGCTGCCGAATTCGGAAGAACAAATAAACAATGATAGCACTGTTTCTGCCTCATCAAGAGTGGAGTTTGGTTCCCCTGTTCAAGTAACTCCGATATTCAGATCTTTGGCTGCAGGGATTCCCAGCCCACAATTTTCGGAAAGTGAAAGGAACTTCTTAAGGAAAACACTAGGAGTGGAGTCTCCATCTCTCAACCCAAGTGCTCAACCATCACAACCGCCACCCTGCAAAAGAGCCCTACTAGACAGTTTACAATCCTAG 1362 0.395 MKKQEEQCNRESKKKGHIVTWTQEEDDILREQIGIHGTEKWYTYLNSDFKKGGWSPEEDMLLCEAQKLYGNRWTEIAKVVSGRTDNAVKNRFSTLCRKRQKYEALAKENSISSHINSNNKKIVFQHAYNTDATSESAISIKKMRRAHITDDGGKIKFGDRSHLRNGTLINQHPRTPFAVLAQNSQNINNLLDELQICNAKFSSSAQNNKTQGTFLKRDDPKIDALMQQAELLSSLAQNIDTEDMDQSLENTWKVLQEFLNRTKEANNLKCKIQGLKLADLKNMVEDLSSNEGGQPCWRQMDLYEDSPASSEYSTGSTILPLSAGDIMEHSSHRDIKTEMKTTQIEDKKEVDGCERGVLVTATLDQVDMLPNSEEQINNDSTVSASSRVEFGSPVQVTPIFRSLAAGIPSPQFSESERNFLRKTLGVESPSLNPSAQPSQPPPCKRALLDSLQS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3548 453 SUPERFAMILY Homeodomain-like 39 104 IPR009057 -
Ahy3g3548 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 100 IPR017930 -
Ahy3g3548 453 Coils Coil 180 200 - -
Ahy3g3548 453 Pfam Myb-like DNA-binding domain 51 94 IPR001005 -
Ahy3g3548 453 PANTHER TRANSCRIPTION FACTOR MYB88 11 448 - -
Ahy3g3548 453 Gene3D - 53 126 - -
Ahy3g3548 453 PANTHER MYB PROTEIN-RELATED 11 448 - -
Ahy3g3548 453 CDD SANT 54 95 IPR001005 -
Ahy3g3548 453 ProSiteProfiles Myb-like domain profile. 46 96 IPR001005 -
Ahy3g3548 453 SMART sant 50 98 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3548 Ahy-Chr3 134449892 134455232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3548 40 451 MYB Transcription Factor Family AT1G14350 50.962 1.14e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ahy3g3548 Myb_DNA-binding 1.70E-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1670 15 39103763 39109920 Ahy3g3548 3 134449892 134455232 hybridization
Ahy3g3548 3 134449892 134455232 Ahy15g1670 15 39103763 39109920 PCT