LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy3g3542	ATGATGGGAAGACAAAGTGCTAGAAAGTGGATTAGAAACTTAATTCTGGGCAAGAAATCATCATCGAAGTCTAATTCATCAAAACCCCAAGATGTTCTTAAACCTTCAAGTAACAAGGATATGGTGATGGTGGTGGTGTCTTCTGAGGCATCAATGTCTCCTCATCCAGCCCCTCCAAGTTCTTCAGCTAAAGCCATAACAAAAGGAATGGTACCAGAAAATGAGGTAGTTAATGGATCATCAAATGAAAAGCTTTTTGTTATTGCAAGTGAAGATGAACAGGCCAATGCAGAAGTACAAGATGCTGTTGCTAATATTGGATCTGAGGATCATGCTGAGAAAATCAACCTTACAGAGGCAGCTATAATAGCTCAAGCAGCTCTTAGAGGCTATCAGGCACGCAGAAAGTTTGAGATACTGAAAGGGATGATACCCCTTCAAGCTCTTATTCGTGGCAAGTTGGCTCGAAGAGAAGCTGTTTCTGCTCTATACTGTGTTAAGGGAATAGTTAAAGTTCAAGCACTCGCTCGTGGTTATAAAGTTAGGCACTCTGCTATTGGTCTTCAAGTGCAGAAAACTCTTAAGGATACTAAATGTTCAAATTCCATTGGGAGAGTTACATCAACAAAGGCAGAGAAGATTTCAGATAGTGTCTTTGTTCACAAGCTTCTGGCATCGTCGCCGGCGGCTGTGCTTTCCAGACAACTCAGATATGAATGGCTTGAACGTTGGACGAGATCACGATTTTGGGCACCTCTTCAAGAATTGAAGAAAATTGATGAGAAAAATGTTTTAGGCCAAACAGTAGAAGCTGGTGAGGGAAAAGCCAAAAGAAATGCAAGGAAAGGAGAAGCTGTGAGGGTTGACAAGAAAAAGGAATCAAGCATGGCATTGCATTCATCAGTTAAGGAAAATGAGAAAAGAAAACAACACATGACAAGAATTGAGGATACTAATCATAGTAGTTTCCAGAGAAGAGCTTCACTTCCTGCTAATTATTTGAAGAATGATAAGAATAAGAATGAGTCATCACAAAACACTACTACTCCAAGAGTTCCAAGTTATATGGCTCCTACTGAGTCTGCAAAAGCTAAGCTAAACTCTCCAAGATTTGGTAATGATTTGGTATTAGACAGAAATGGTATAAGCAGGAGGCTGTCACTTTCATTTTCACTTAATGGCAAGTTAGGAATGGCAAAGGTAGATAACAGATCCCTCTCATCTTCAAGGGATTGGACAGTTTCAGATAAGTTGATCCAACCTCAGTGGAGAAGGTGA	1278	0.4022	MMGRQSARKWIRNLILGKKSSSKSNSSKPQDVLKPSSNKDMVMVVVSSEASMSPHPAPPSSSAKAITKGMVPENEVVNGSSNEKLFVIASEDEQANAEVQDAVANIGSEDHAEKINLTEAAIIAQAALRGYQARRKFEILKGMIPLQALIRGKLARREAVSALYCVKGIVKVQALARGYKVRHSAIGLQVQKTLKDTKCSNSIGRVTSTKAEKISDSVFVHKLLASSPAAVLSRQLRYEWLERWTRSRFWAPLQELKKIDEKNVLGQTVEAGEGKAKRNARKGEAVRVDKKKESSMALHSSVKENEKRKQHMTRIEDTNHSSFQRRASLPANYLKNDKNKNESSQNTTTPRVPSYMAPTESAKAKLNSPRFGNDLVLDRNGISRRLSLSFSLNGKLGMAKVDNRSLSSSRDWTVSDKLIQPQWRR*	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy3g3542	425	ProSiteProfiles	IQ motif profile.	167	193	IPR000048	GO:0005515
	Ahy3g3542	425	Pfam	IQ calmodulin-binding motif	118	137	IPR000048	GO:0005515
	Ahy3g3542	425	Pfam	IQ calmodulin-binding motif	167	183	IPR000048	GO:0005515
	Ahy3g3542	425	MobiDBLite	consensus disorder prediction	322	355	-	-
	Ahy3g3542	425	MobiDBLite	consensus disorder prediction	270	355	-	-
	Ahy3g3542	425	MobiDBLite	consensus disorder prediction	17	34	-	-
	Ahy3g3542	425	PANTHER	IQ CALMODULIN-BINDING MOTIF PROTEIN	2	310	-	-
	Ahy3g3542	425	PANTHER	IQ CALMODULIN-BINDING MOTIF PROTEIN	332	398	-	-
	Ahy3g3542	425	Pfam	Protein of unknown function (DUF4005)	336	395	IPR025064	-
	Ahy3g3542	425	Gene3D	-	116	164	-	-
	Ahy3g3542	425	ProSiteProfiles	IQ motif profile.	141	168	IPR000048	GO:0005515
	Ahy3g3542	425	ProSiteProfiles	IQ motif profile.	117	145	IPR000048	GO:0005515
	Ahy3g3542	425	SMART	iq_5	139	160	IPR000048	GO:0005515
	Ahy3g3542	425	SMART	iq_5	116	138	IPR000048	GO:0005515
	Ahy3g3542	425	SMART	iq_5	164	186	IPR000048	GO:0005515
	Ahy3g3542	425	MobiDBLite	consensus disorder prediction	274	321	-	-
	Ahy3g3542	425	MobiDBLite	consensus disorder prediction	1	39	-	-
	Ahy3g3542	425	PANTHER	IQ-DOMAIN 5-RELATED	2	310	-	-
	Ahy3g3542	425	PANTHER	IQ-DOMAIN 5-RELATED	332	398	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy3g3542	Ahy-Chr3	134379501	134382325	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy3g3542	90	308	IQD Protein Family	AT1G18840	42.149	4.96e-37	140

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy3g3542	-		-	aip:107634789	761.911