Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3537 ATGTTGCAGTTGAAGCTACACTCAATCCCTTCATCACTTTCTTCTTCTTCTTCCAATTCTCTCTGCCTTCAGAACCATTCCTTTCTCTCTCCAAAGTTCCTTCCTTTTTCTTCTGTCACTCCAAAGCCCTTCTCCATCACATGCCGCCACTCCGACCTCTTCGACCAGAAAACCTTCTCCTCCTCCGCACCTTCTTCTTCTTCTTCTTCTTCAGGTGGAGCTTTGCCACCAAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCACTTTCCATCACTCCTAGGCCTCCGGAATTTGCACCGCTCGATTCAGGGGCATTCAAAATATCTAGGGAAGGTTATGTTCTGCTTCAGTTTGCACCCGCAATTGCTTCGCGCCAGTATGATTGGACTAGAAAGCAGGTGTTCTCTTTATCAGTGGGTGAAATGGGAACTGTGATCAGCCTTGGCGCAAGGGAGTCTTGTGAATTCTTCCATGATCCTATGAAGGGCAAAAGTGATGAAGGAAAAGTCAGAAAAGTTTTGAAGGTGGATCCTCTTCCAGATGGTTCTGGTCACATGTTTAACCTCAGTGTTCAAAACAGGATTGTGAATGTCGATGAAAACATCTACATCCCTGTTTCAAGAGCAGAGTTAACAGTTTTGAGCTCAATTTTCAATTTTATTATGCCGTACCTTCTCGGTTGGCACACCTTTGCGAACTCGATAAAGCCAGAGGATTCGAGAGGAGCGAATAATGCAAACCCTACATATGGAGGAGACTATGAATGGAATAGACTGTGA 789 0.4499 MLQLKLHSIPSSLSSSSSNSLCLQNHSFLSPKFLPFSSVTPKPFSITCRHSDLFDQKTFSSSAPSSSSSSSGGALPPRVYVGHSIYKGKAALSITPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWTRKQVFSLSVGEMGTVISLGARESCEFFHDPMKGKSDEGKVRKVLKVDPLPDGSGHMFNLSVQNRIVNVDENIYIPVSRAELTVLSSIFNFIMPYLLGWHTFANSIKPEDSRGANNANPTYGGDYEWNRL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3537 262 Pfam Whirly transcription factor 85 219 IPR013742 GO:0003697|GO:0006355|GO:0006952
Ahy3g3537 262 Gene3D Transcriptional Coactivator Pc4; Chain A 72 249 IPR009044 GO:0003677|GO:0006355
Ahy3g3537 262 SUPERFAMILY ssDNA-binding transcriptional regulator domain 77 261 IPR009044 GO:0003677|GO:0006355
Ahy3g3537 262 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 12 261 IPR013742 GO:0003697|GO:0006355|GO:0006952
Ahy3g3537 262 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 12 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3537 Ahy-Chr3 134331398 134333948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3537 4 261 Whirly Transcription Factor Family AT1G14410 62.595 3.27e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Ahy3g3537 Whirly 2.80E-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3537 - - gmx:100789252 369.392