Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3535 ATGTTACTACTATTACTACGCACTGCGGCATCTGGTGCTGTCACATATTCATGCAAATGCAAGGCACCATCACTAAGAACAAGAACCCGAACCCTTATGCATCTTTTCCTTCCAATTCATTCCAACACCAACATCAATTCCACTATCCTTTGTTCTTCATCCTCACTCAATGATGACTCATTTTCTAACCCTAAACCAACAACCAAGTTGGGTTACACTCCTCCAGAGGAACTCTTTGGCCTCGACGTTGAACTCAACCCAAGCAAAACTAACTCTCAGACACAGGAGCCAAGGTCTTGGTTTGGTCCAAATGGACAGTATATCAAAGAGCTTCCTTGTCCGAGTTGCCGGGGAAGGGGTTATACTCCGTGTACAGAATGTGGAATAGAAAGATCAAGATCAGATTGTCCAAAATGTAACGGAAAGGGTATAGTGACTTGCCACCAGTGCTCTGGAGAATGTGTTATATGGGAAGAATCAATTGATGAGAAACCATGGGAGAGAGCCCGTTCAATTTCACCACTTAAAGTGAAGGAAGATGATGAAGTAGACAAGTTAGACATAAAGTTAGATGTGAAGAAAAAATCCAAGCGTGCTTACCAGTCACCATCTCCTGAAGTGGGATTAAAGATTAGTCGTTCATTGAAAAGTCTTAATGCGAAAACTGGTCTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCAAGCTTCAGGCGCAAAGAGTGGCTGCTATTAAGAGAGCCAAGGGAACTATTGCAGCAAGAAAGCATACTTCCAAGACTATGAAAGCTTTCTTTAGTGATCCGATAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGTCAAAACTGTGGACGCGAAGGGCATAGGAGACACTACTGTCCGGAACTCAAGGATTCTTCGGTTGACCGGCGATTCACATGCAAATTATGTGGGGAAAAGGGCCACAACAGAAGAACATGCAACAAGTTAAAGATAAGCCACGACAATGGTAGAGTTATAAAACACAATAGGTGTAAAATATGTCGCCAATATGGCCATAACCAGAGGACATGCCCTCAAGTTGTTCCCAGCAAAAGAAGGGACACTCTCTTGAATAAAGCATACAAGTGTAGGTTGTGCCACAAAGAGGGACACAATATTAGGACATGTCCTAGCAGAGTTGTTACTGAAAATCCTCAAGATCAGTAG 1209 0.4293 MLLLLLRTAASGAVTYSCKCKAPSLRTRTRTLMHLFLPIHSNTNINSTILCSSSSLNDDSFSNPKPTTKLGYTPPEELFGLDVELNPSKTNSQTQEPRSWFGPNGQYIKELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGIVTCHQCSGECVIWEESIDEKPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRAYQSPSPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKRAKGTIAARKHTSKTMKAFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSSVDRRFTCKLCGEKGHNRRTCNKLKISHDNGRVIKHNRCKICRQYGHNQRTCPQVVPSKRRDTLLNKAYKCRLCHKEGHNIRTCPSRVVTENPQDQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3535 402 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 29 394 - -
Ahy3g3535 402 ProSiteProfiles Zinc finger CCHC-type profile. 287 302 IPR001878 GO:0003676|GO:0008270
Ahy3g3535 402 SUPERFAMILY Retrovirus zinc finger-like domains 337 393 IPR036875 GO:0003676|GO:0008270
Ahy3g3535 402 SUPERFAMILY Retrovirus zinc finger-like domains 284 330 IPR036875 GO:0003676|GO:0008270
Ahy3g3535 402 Gene3D - 283 330 - -
Ahy3g3535 402 SMART c2hcfinal6 344 360 IPR001878 GO:0003676|GO:0008270
Ahy3g3535 402 SMART c2hcfinal6 376 392 IPR001878 GO:0003676|GO:0008270
Ahy3g3535 402 SMART c2hcfinal6 313 329 IPR001878 GO:0003676|GO:0008270
Ahy3g3535 402 SMART c2hcfinal6 286 302 IPR001878 GO:0003676|GO:0008270
Ahy3g3535 402 Pfam Zinc knuckle 375 391 IPR025829 -
Ahy3g3535 402 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Ahy3g3535 402 Gene3D - 340 400 - -
Ahy3g3535 402 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 29 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3535 Ahy-Chr3 134323691 134327192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3535 57 398 C2H2 Transcription Factor Family AT5G20220 62.393 8.93e-157 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3535 - - gmx:100800156 597.045