LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy3g3534	ATGGAGCTTGCATCTGTGAAGAGTGAATTCAACCCAAGATGTAATAGGTTACACGTTATGGTGGATGGCAGCGAGGCTAATGCTTCAAGGGGCATCAAAAGGCGGCGAAGAGATTCGTCTTCGCCTCTGCCTCTAACGGTGTTAGGGGGCAATGAACAACAAGGTGAACAGCCGGAAGCCCAACAGACACCACAGAGTGGCCAATCGACCCCCAGCACCGTGAAGAGAAGTTCAAGGTTCAGAGGAGTTAGCAGACACAGATGGACTGGAAGGTATGAAGCACATCTATGGGATAAAGGGACATGGAATCCAACTCAGAAAAAGAAAGGAAAGCAAGTGTATTTGGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTTAAGTATTGGGGAACATCAACGTTCACCAATTTTCCAGTATCAGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCATTGAGAAGAAGAAGCAGTGGATTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGAAGAGTGTTCGGTAACAAGTACCTTTACCTTGGAACTTACAGTACACAAGAAGAGGCAGCTCGTGCGTATGATATTGCTGCAATTGAATACAGAGGCATAAATGCTGTGACAAACTTTGACTTGAGCACTTACATCAGATGGCTAAGACCAGGAGGAGTACACTCTAGCACCTCTCAAGATCAAAAGCCGAGCACAGACCCTCGGATATTTACAACCTCTAACCCCATCCTAGCCACAGGAGCCACCGAGCTATCAAACTTCAACTTCCATCCAGTCCCTGCAAGCGAATTGGACATCACCAAGAAGAAAGAGTTTTCCAAGTTTGCGGCACCTTTAAGTCCATGCTATAAATCACCTTCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAACCTGAATTCTGCAGATGAAGAAGCTGAAGAAGTTGAATTGAAATATCCAGAAGAGGGCAGTGATGGGATTGGAGGGATTCTTAATAACAATGACACTAACAGTATATCTTACTTTGGTTCTTCTTCCAATATCAACAGATTACCTAACTTAGTGTCTCCAGAAAGCAGCAAAATGCCAATGTATCACAGAACTGTTATGCCATCGCTGTGGAATGGTGCTTTCAACATTTCTGACTGA	1260	0.4357	MELASVKSEFNPRCNRLHVMVDGSEANASRGIKRRRRDSSSPLPLTVLGGNEQQGEQPEAQQTPQSGQSTPSTVKRSSRFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGGVHSSTSQDQKPSTDPRIFTTSNPILATGATELSNFNFHPVPASELDITKKKEFSKFAAPLSPCYKSPSSSPTALGLLLKSSVFRELMQRNLNSADEEAEEVELKYPEEGSDGIGGILNNNDTNSISYFGSSSNINRLPNLVSPESSKMPMYHRTVMPSLWNGAFNISD*	420

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy3g3534	419	MobiDBLite	consensus disorder prediction	21	82	-	-
Ahy3g3534	419	Coils	Coil	335	355	-	-
Ahy3g3534	419	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	410	-	-
Ahy3g3534	419	ProSiteProfiles	AP2/ERF domain profile.	79	145	IPR001471	GO:0003700\|GO:0006355
Ahy3g3534	419	SUPERFAMILY	DNA-binding domain	180	241	IPR016177	GO:0003677
Ahy3g3534	419	MobiDBLite	consensus disorder prediction	44	78	-	-
Ahy3g3534	419	PRINTS	Ethylene responsive element binding protein signature	80	91	IPR001471	GO:0003700\|GO:0006355
Ahy3g3534	419	PRINTS	Ethylene responsive element binding protein signature	221	241	IPR001471	GO:0003700\|GO:0006355
Ahy3g3534	419	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	410	-	-
Ahy3g3534	419	SUPERFAMILY	DNA-binding domain	78	147	IPR016177	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy3g3534	Ahy-Chr3	134320935	134323909	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy3g3534	59	243	AP2-EREBP Transcription Factor Family	AT5G57390	67.027	1.49e-84	263

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Ahy3g3534		AP2	7.40E-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy3g3534	-		-	adu:107481246	824.313

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