Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3533 ATGGCATTAAAAAATGAAATTTTGTTGTTGTATTTTGTGTGTTTGGCATTAACATGCATTGATGCTAACATCCTTGAGAACGATAAGTACTGGACGAACCATGAACAAGAGTTCGATGGTTACTGGAAGCAAAGAGCCGAGATTGCTAAAACTGATAACCTAAAAGCCTATTTCCCTGATCCCTATGAAGTCTCTGGAAACTTCACGTCTGCCATTAGTGACGACATTATTGGAAAGAGTGGAGGAAGAAGGACGTTGAAAGGAAAGAATAGAGGAGCTGCATGCATGGCGACCAACCCCATTGACAGGTGCTGGAGGTGTGACCCAAACTGGGCTAATAACCGCCAAAAACTTGCAGATTGTGTTCAGGGATTCGGAAGAAACACCATTGGAGGAAAAGGAGGAAAATTCTACGTGGTCAACGACTCTTCAGATGGTGACTTGCTGTCTCCGAAACCAGGTACTATCCGGCATGCAGTGACAAGAACTGAACCCTTGTGGATCATCTTCTCCCGAAGCATGGTGATCAAGCTCCAGCAAGAGCTCATCATGGCCAGCAACAAGACCATTGATGGCAGGGGATTCGATGTCCAAATTGCAAACGGTGCTGGCATCACCGTGCAGTTCATCAAGAACGTCATTATCCATGGCATCAAGGTCTACAACACGGTGGTCAAGACAGGTGGCATGATTAGGGACTCCGAAACTCATTACGGATTTCGGACACAGAGTGATGGTGATGGTATCTCCATCTTTGGCGCAAGCAACATCTGGATCGACCATGTTTCCATGAGAAACTGCTCCGATGGATTGATTGATGCCATTATGGGCTCCACCGCCATTACCATCTCCAACGGCCATTACACTGACCACAATGAGGTGATGCTGTTTGGAGCGAGTGACAGCTACAGCGGCGACAAGATCATGCAAATCACCTTGGCATTCAACCACTACGGCAAGAGGTGTGTTCAGAGAATGCCAAGGGCCAGACATGGTTTTGTCCATGTTGTCAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGCAGCAAGAACCCTACCATCATCAGTGAGGGTAACAGGTTCATTGCCCCTGAAAACCGCTTTGCCAAAGAGATAACGAAGAGAGAATACGCAGAAGAAAGCATATGGAAGAACTGGCAATGGAGATCAATCAATGATGAATACTTGAATGGAGCATTCTTCGTTCAATCAGGGGCTGAATTGAAGAACAGACCATTCTCAAGGGAGGACATGATCACAGCCAAGCCAGGAACATATGTTGGAAGGCTTACACGCTTTGCGGGTGTTCTTCCATGCAAAATTGGCCAACCATGCTAG 1347 0.4647 MALKNEILLLYFVCLALTCIDANILENDKYWTNHEQEFDGYWKQRAEIAKTDNLKAYFPDPYEVSGNFTSAISDDIIGKSGGRRTLKGKNRGAACMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTIGGKGGKFYVVNDSSDGDLLSPKPGTIRHAVTRTEPLWIIFSRSMVIKLQQELIMASNKTIDGRGFDVQIANGAGITVQFIKNVIIHGIKVYNTVVKTGGMIRDSETHYGFRTQSDGDGISIFGASNIWIDHVSMRNCSDGLIDAIMGSTAITISNGHYTDHNEVMLFGASDSYSGDKIMQITLAFNHYGKRCVQRMPRARHGFVHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIAPENRFAKEITKREYAEESIWKNWQWRSINDEYLNGAFFVQSGAELKNRPFSREDMITAKPGTYVGRLTRFAGVLPCKIGQPC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3533 448 Pfam Pectate lyase 181 364 IPR002022 -
Ahy3g3533 448 SUPERFAMILY Pectin lyase-like 99 439 IPR011050 -
Ahy3g3533 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Ahy3g3533 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Ahy3g3533 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Ahy3g3533 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Ahy3g3533 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Ahy3g3533 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Ahy3g3533 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Ahy3g3533 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Ahy3g3533 448 Gene3D - 98 441 IPR012334 -
Ahy3g3533 448 PANTHER PECTATE LYASE 18-RELATED 7 448 IPR045032 GO:0030570
Ahy3g3533 448 SMART amb_all 173 370 IPR002022 -
Ahy3g3533 448 PANTHER PECTATE LYASE 7 448 - -
Ahy3g3533 448 Pfam Pectate lyase, N terminus 37 86 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3533 Ahy-Chr3 134317238 134319200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3533 38 448 Polysaccharide Lyase AT1G14420 60.094 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3533 K01728 - gmx:100798579 719.924