Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3520 ATGGAAGAGGCTATCAACCAACTCTATGCTCCTCATCTCCGCCAACATAATCAAACCCTTTTTCACCCCTCTCAACCTTCTTTCCAAGGATCAAAATCAGTGGTGAACTTCGAGAGTGTTAGTGTTAGTGGCAGCGGGCCCTTGTTATTGGAAGACAACACTTTTGGCGTTGATGATGAAGACTATGACTGTTGCTTGCAGCAACAAGGTAGCAGTTACAAGAAGAAGAGGCTGAGAAGCGACCAAGTTGAGTTTCTGGAGAAGAGTTTCGAGGTGGACAACAAGCTTGAACCCGAAAGAAAGTTCCAACTCGCAAAACAGATTGGCTTGCATCCAAGGCAAGTTGCCATATGGTTCCAGAATCGAAGAGCAAGGTTCAAGACCAAACGAATTGAGAAAGATTTTGCTGCATTGAAACAAAGCTTTGATACCCTTCAACAACAATATGACCTTCTCCTTCGTGACAATCTCAACTTACAACAGCAGGTTGATTCATTGAAGAAGAGAGTAATTCCGAGAGAAGAAGGTTTGGATGATGGTGTGAATTCAAAGCATATAATAGAGGAGGTGGGTGTGAATATGATATCCAAAGTGGAAGATGCCACAACCACCACCAATTCATCAAAAAGCGATGTGCTTGATTCTGATAGCCCAAACTACACTGATGGAAACCATTCCTCCTCACCTCATCATGATTTCTCTTCTCATCATCAACAACATAATAACAATAACAACCTCTTGAAAACCCTCTCTTTCTTACCAAAGATTGAAGATGATGATGATCATGACAACACTTGCAATTTTGGGCTCCCTGTTGTTGATGAAGATCAAGCCTTTGATTTTTGGTCTTACTGA 855 0.4175 MEEAINQLYAPHLRQHNQTLFHPSQPSFQGSKSVVNFESVSVSGSGPLLLEDNTFGVDDEDYDCCLQQQGSSYKKKRLRSDQVEFLEKSFEVDNKLEPERKFQLAKQIGLHPRQVAIWFQNRRARFKTKRIEKDFAALKQSFDTLQQQYDLLLRDNLNLQQQVDSLKKRVIPREEGLDDGVNSKHIIEEVGVNMISKVEDATTTTNSSKSDVLDSDSPNYTDGNHSSSPHHDFSSHHQQHNNNNNLLKTLSFLPKIEDDDDHDNTCNFGLPVVDEDQAFDFWSY* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3520 284 Pfam Homeobox associated leucine zipper 129 169 IPR003106 GO:0006355|GO:0043565
Ahy3g3520 284 SUPERFAMILY Homeodomain-like 64 129 IPR009057 -
Ahy3g3520 284 Pfam Homeodomain 74 127 IPR001356 GO:0003677
Ahy3g3520 284 Coils Coil 142 169 - -
Ahy3g3520 284 SMART HOX_1 71 133 IPR001356 GO:0003677
Ahy3g3520 284 MobiDBLite consensus disorder prediction 201 241 - -
Ahy3g3520 284 Gene3D - 67 135 - -
Ahy3g3520 284 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Ahy3g3520 284 CDD homeodomain 74 130 IPR001356 GO:0003677
Ahy3g3520 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5-LIKE 17 282 - -
Ahy3g3520 284 MobiDBLite consensus disorder prediction 201 228 - -
Ahy3g3520 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 282 IPR045224 GO:0003700
Ahy3g3520 284 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Ahy3g3520 284 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Ahy3g3520 284 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3520 Ahy-Chr3 134162105 134163408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3520 60 199 Homeobox Transcription Factor Family AT4G40060 48.571 6.53e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy3g3520 Homeodomain 3.70E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3520 - K09338 qsu:112000549 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1628 15 34757398 34760072 Ahy3g3520 3 134162105 134163408 hybridization
Ahy3g3520 3 134162105 134163408 Ahy5g1013 5 21791895 21794525 PCT