Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3494 ATGGTGATCTGTTTGCAATTCGGGTCTGGAATTGTTGGTTGTTACTTGGATGCTTACATGAGATCTCAGATCAAAAGACCAATGGTATCTTCTAGAGGAGCAGCCTCGGGACAACCCCACGTTGCAATTGATAATACTGTTCAGAAACCGACTCAAGATGATGCCGTAAAATACCTAAAGACCGTGAAGGATGCTTTTTATGATAAGCCGGAAAAGTATGCTAACTTTTTACAAGTAATGAAAGATTTCAGGGCTCAAAGAACTGATACAGATGATGTCATAGCAAGAGTGAAGGAGCTCTTTAAAGGGCATAGAAATCTAATTGTAGGGTTTAACACCTTCTTGCCTAAGGAACATGAAATTGCACTTCCATTGGAGGATGAACAACCTCAGCAGAATAAGCCTGTTGATTTTGTTGAAGCTGTAAATTTTGTAGGCAAGGTCAAGGTAAGATTTTGTTGA 462 0.3961 MVICLQFGSGIVGCYLDAYMRSQIKRPMVSSRGAASGQPHVAIDNTVQKPTQDDAVKYLKTVKDAFYDKPEKYANFLQVMKDFRAQRTDTDDVIARVKELFKGHRNLIVGFNTFLPKEHEIALPLEDEQPQQNKPVDFVEAVNFVGKVKVRFC* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3494 153 PANTHER SIN3B-RELATED 38 152 IPR039774 GO:0003714
Ahy3g3494 153 SUPERFAMILY PAH2 domain 48 117 IPR036600 GO:0006355
Ahy3g3494 153 ProSiteProfiles PAH domain profile. 47 118 IPR003822 GO:0006355
Ahy3g3494 153 Pfam Paired amphipathic helix repeat 71 115 IPR003822 GO:0006355
Ahy3g3494 153 Gene3D Paired amphipathic helix 54 116 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3494 Ahy-Chr3 133780001 133783513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3494 51 142 WRKY Transcription Factor Family AT4G12020 48.913 1.44e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy3g3494 PAH 3.50E-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3494 K11644 - ahf:112791856 312.383