Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3493 ATGGTATCTTCTAAAGGAGAACCCTCGGGGCAACCCCATGTTGCGATTGACAATGCTGTTCAGAAACTGACCCACGATGATGCCGTAAAATACCTGAAGACCGTGAAGGATGCGTTTCATGATAAGCCGAAAAAGTATGCTGACTTTTTAAAAGTAATGAAAGATTTCAAGGCTCAAAGAACTGATACAGATGGTGTCGTAGCAAGAGTGAAGAAGCTATTTAAAGGGCATAGAAATCTAATTGTAGGGTTTAACGCCTTCTTGCCTAAGAAACATGAAATTGAACTTCCACTGGAGGATGAACAACCTCAGCGGAATAAGCCTGTTGATTTTGTTGAAGCTGTAAATTTTGTGGGCAAGGTCAAGAGCCGGTTTCAAGGCGATGACAGCGTCTATAAGTCGTTTCTTGATATATTGGAGATGTACAGAAAGAAAACCAAGACTATGTCTGAGGTTCACTTAGAGGTTGCTGCACTTTTCCGTGGCCATGAAGATCTTCTTGAGGAGTTTACTCGTTTTCTTCCTGATAAGAGCTATGCAATGCCAGCTGTTGTACCAATGGATGTTGAAAAGAAAGAAAGTACCATGGCTTCTAATGAGGACCCTGGTGCTGAACCATTCCATGATGAACATGAAAAGTTTGACCTGTGCCCTATGTCATCTACTTGTGAAGATAAAAGCTCTTTGAAAAGTATGTGTAGTCAAGTCGGTGCTTTCCTTGAAAAAGTCAAGGAGAAATCTCGAACTCCTGAGGTTTACCAGGAATTTTTGAAGTGTCTACTTTTCTACAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATCGGTGGGTGATTTGCTGGGGAAATTTCCAGATCTTATGGATGGATTTAATGATTTTTTGGTACAATGCGAGAAGAATGAAGGATTTTTTGCTGGCGTCATGAATAAAAAGTCCTTGCAGAATGAAGGACATGGATTGAAAGCATTGAAGGCAGAGGACATGGATATAGATCAAGGGGTGGAAAAAGAAATGGATGGAGAGTTACCAATTACTGCCTCATGCATCGAAACACTATTTGAAAAAATAGTCATAGGATGCAAAAGCATAATAAAAAAAGAATGA 1107 0.402 MVSSKGEPSGQPHVAIDNAVQKLTHDDAVKYLKTVKDAFHDKPKKYADFLKVMKDFKAQRTDTDGVVARVKKLFKGHRNLIVGFNAFLPKKHEIELPLEDEQPQRNKPVDFVEAVNFVGKVKSRFQGDDSVYKSFLDILEMYRKKTKTMSEVHLEVAALFRGHEDLLEEFTRFLPDKSYAMPAVVPMDVEKKESTMASNEDPGAEPFHDEHEKFDLCPMSSTCEDKSSLKSMCSQVGAFLEKVKEKSRTPEVYQEFLKCLLFYSREIITRQELQSSVGDLLGKFPDLMDGFNDFLVQCEKNEGFFAGVMNKKSLQNEGHGLKALKAEDMDIDQGVEKEMDGELPITASCIETLFEKIVIGCKSIIKKE* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3493 368 Gene3D Paired amphipathic helix 27 89 IPR036600 GO:0006355
Ahy3g3493 368 Gene3D Paired amphipathic helix 228 300 IPR036600 GO:0006355
Ahy3g3493 368 PANTHER SIN3A, ISOFORM G 18 315 - -
Ahy3g3493 368 SUPERFAMILY PAH2 domain 21 90 IPR036600 GO:0006355
Ahy3g3493 368 SUPERFAMILY PAH2 domain 104 176 IPR036600 GO:0006355
Ahy3g3493 368 Gene3D Paired amphipathic helix 105 178 IPR036600 GO:0006355
Ahy3g3493 368 SUPERFAMILY PAH2 domain 234 298 IPR036600 GO:0006355
Ahy3g3493 368 ProSiteProfiles PAH domain profile. 107 177 IPR003822 GO:0006355
Ahy3g3493 368 PANTHER SIN3B-RELATED 18 315 IPR039774 GO:0003714
Ahy3g3493 368 ProSiteProfiles PAH domain profile. 229 298 IPR003822 GO:0006355
Ahy3g3493 368 Pfam Paired amphipathic helix repeat 45 88 IPR003822 GO:0006355
Ahy3g3493 368 Pfam Paired amphipathic helix repeat 131 174 IPR003822 GO:0006355
Ahy3g3493 368 Pfam Paired amphipathic helix repeat 251 295 IPR003822 GO:0006355
Ahy3g3493 368 ProSiteProfiles PAH domain profile. 21 91 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3493 Ahy-Chr3 133766027 133770151 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3493 23 115 WRKY Transcription Factor Family AT4G12020 47.312 2.68e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy3g3493 PAH 2.20E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3493 K11644 - gmx:100781798 377.867