Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3492 ATGAAGAGGTCCAGAGATGATGTTTACATGAGTTCTCAGCTCAAACGACCTATGGTATCTTCTAGAGGAGAACCCTCCGGGCAACCCCAGGTTACGATTGGTAATGCTGGTCAGAAACTGACCACAGATGATGCCTTACAATACCTGAAGGCCGTGAAGGATATGTTTCATGATAAGAAGGAAAAGTATGATGACTTTTTAGAAGTAATGAAAGATTTCAAGGCCCAAAGAATTGATACAGCGGGTGTCATAGCAAGAGTGAAGGAGCTCTTTAAAGGGCATAGAAATCTAATTTTAGGGTTTAATACCTTCTTGCCTAAGGGATATGAAATTACACTTCCGTTGGAGGATGAACAACCTCAGCAGAAGAAGCCTGTTGAATTTGTTGAAGCTATAAATTTTGTGGGCAAGATCAAGAGTCGGTTTCAAGGCGATGACCGTGTGTATAAGTCGTTTCTTGATATATTGAATATGTACAGAAAGGAAACCAAGACTATCTCTGAGGTTTACTTAGAGGTTGCTGCACTTTTCCGTGACCATGAAGATCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATAATTCAGTATCAGCTTCAACTCATTATACTTCTGCCCGAAATTCTATACTTCGTGATAAGAGCTCTGCAATGCCAACTATTAGACCAATGCATGTTGACAAGAAAGAAAGGACCACGGCTTCTCATGGTGAACGTGATCTCAGCGTTGATCATCCTGATCAAGAACTTGATAAAAGTTTGGTGAGGGCTGATAAGGACCAGAAAAGGCGTGCTGAAAAGGAAAAGGACCGTCGAGAAGAGAGAGATAGGAGAGAAAGGGAAAGGGATGATAGAGATTATGATGTTGATTGTAATAGAGACAGTTTATCCCACAAGCGAAAATCTGGTCGTAGGACTGATGACTCTGGTGCTGAACCATTCCATGAAGAAGATGAAAATTTTGACCTGCGCCCTATGTCATCTACTTGTGAAGATAAAAGCTCTTTGAAAAGTATGTGCAGTCAAGTCGTTGCTTTCCTTGAAAAAGTCAAGGAGAAATTACGAACTCCTGAGGTTTATCAAGAATTTTTGAAGTGTCTACATATATACAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATTGGTGGGTGATTTGCTGGGGAAATTTCCAGATCTTATGGAGGGATTTAATGAATTTTTGGCACAATGCGAGAAGAATGAAGGATTTCTTGCTGGCGTCATGAACAAAAAGTCCTTGCGGAATGAAGGACATGGATTGAAAGCATTGAAGGTAGAGGAGAGGGATAGAGATCGAGACCGTGATAAGGTTGAAGGGGTGAAAGAAAGGGATAGAGAGTGCCGAGAAAGGGACAAATCCACTGCAGCAGCTGCAAATAAAGATGTTTTCGTTCCTAAGATGTCTCCATATGCCACCAAGGATAAGTATTTGGCAAAACCTATAAATGAGCTAGACCTTTCTAATTGTGAACAATGCACTCCCAGTTACCGTCTTCTTCCAAAAAATTACCCAATACAAATACCTAGCCAGAGAACAGAACTTGGTGCAGAAGTATTGAATGACCACTGGGTGTCTGTCACTTCAGGAAGTGAAGATTATTCCTTTAAACACATGCGAAAAAATCAGTTTGAAGATATTCTGTTTAGATGTGAAGATGACAGGTATGAACTTGATATGCTGATCGAGTCTGTAAATGTAGCAATCAAGCGAGTAGAAGAGCTCTTGGAAAAGATTAATACTAATATTATAAAGGGAGACAGTCCAATTCGAATTGAGGAACACTTCACAGCTTCAAATCTTAGATTGATTGAACGATTATATGGTGACCATGGGCTTGATGCAATGGATTGGCTAAGAAAGGATGCACCTCGCTTTTTGCCTGTCATATTAAACCGCTTGAGGCAGAAACATGTAGAATGTGTAAGGATGAGTGTTGCTTGTAAACCAGAGTGGGCTAAAGTACATGCTGCGAATCATCATAAATCACTTGATCACCGTAGCTTCTACTTTAAGCAGCAGGATAAGAAAAGCTTGAGTAATAAAGCCTTACTGACAGAAATCAAAGAAATTAGTGAGAAGAAATGGAAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTCTTCTTCCAAACTTGGAATTTGAGTATCCTGATCCAGAGATCCATGAAGATTTGTATCAGCTAATAAAATACTCCTGTGGAGAACTTTGTACAACTGAACAGATGGATGAAGTTTTAAAGATTTGGACTACTTTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACCCCAGAGTTGTGAAGATACAGATGATATTGTTAAGGCTAAGAGCAATTCTTCTAGAAGTGGCACTTCAAATGATTCTAATGGTAATGATAGTCATGGTTTTGGTGCGACTCCTAATAATTTAAACACTAACGAAAACAGGGATGAGAGTATTCTGTTAGCACAGTCAAATTCTTTTAAAGAATGGTTAGCAAATGGGGATAGTGGAGTTAAAGAGAGTAGTCATCTTGATTCAGACCGCACTTCATACAAGATTGAAACTTTGGGCAGTAATACACAGCAGGGTAAAATACATATGATTGCATCCATCCCTGATGAAGTATCAAGAATCAATAAACAAGACCATCCGATTGAAAAGTTGGCGAGTGCTAATATCTCAGTGGCCTCTGGAATGGAGCAAAATGGAAGAACTAACATAGATAACACATCAGGACTTACTTCACCTCCATCTGGTCCTGGTAATGTTTCTGGCGAGGGAGGGCTTGGCTTACCTCCATCAAAGCCCGCTGATTCTACAAAACCTGTTACATCTTCAAATGGGGTTATTACTGAAGGCACCAAAGTTCACCGACCCAAAGATGAATCAGTTGGACACTTCAAAAGTGATAGAGAAGAGGGAGAATTATCTCCCAATGGAGACTTTGAAGAGGACAACTTTGCAGTTTATAGAGAAGCTGGTTTGGAGGGAGTGATTGAAGGGAAGGATAGTAGTACAAGCCGACAATACCAAAGTAGACATGGAGAAGAAGTTTGTGGTGAAGCCGGAGGAAGAAATGATCTTGATGATGAAGGCGAGGAAAGTCCTCATAGGTCGTCAGAGGACAGTGACCATGCTTTGGAAAATGGTGATGTTTCTGGTAGTGAGTCTGCTGATGGTGACGACTTTACACGAGAAGAAAAAGAGGGTAGGGATCAAGAACACAATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGAAATGGCTGATGGCAATGATGTTGAGGGAGATAGTTCCTTGGTACCAATTTCAGAACACTTTCTTCTCACGGCAAAGCCTCTGGCAAAATATGTCATGCCAGTGTTGCACGAAAAAGAACATTATAGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGATTACATCAGAAATTGTACGAGAGGATTCGGTCGGCAAAGGTTAACTCGTCCTCTGATGAAAGGAAATGGGGGACTACAAATGATACTAGCTCTACTGAACAATATGGCAGGTTCTTGAATTCTCTTTATGACTTCCTGGACGGTTCTTCTGATAATACGAAGTTTGAGGATGACTGTCGAGCTATTGTTGGAACTCAGTCATATGTTTTGTTCACAATAGACAAGCTAATATATAAACTTGTTAAACATCTTCAAGCTGTTGCAGATGATGAGATGGATAACAAGCTTCTTCAATTATATGCACATGAGAAATCAAGAAAACCTGAAAGATTTTTTGATACAGTCTATCATGACAATGCTCGCATTCTTCTTCACGATGACAATATATATCGAGTTGAATGTTCACCTGCACCTACTCGTTTGTCTATTCAACTGATGGACTACGGGCGTGATAAGCCCGAAGTGACTGCTGTGTCAATTGACCCAAAATTTTCAGCATATCTGCACAATGACTTCCTAGCTGTTGTCCCTGACCAAAATAAGAAGTCTGGAATTTTCTTGAATAGGAATAAACGCAAATATGCCACTGTCGATGAATTTACCAGCCAGGCCATGGATGGAGTCGACGTTTTCAATGGCTTGGAGTGCAAGATAGCTTGCAGTTCGTCTAAGGTTTCATATGTTTTAGATACCGAAGACTTTTTAATACGAACAAGAAGCAGAAGGAGAACCTTGCATCATAACAATTCATTCCATGAAAAGGCCAAGCCTTCAGAGAAATGTTCAAGCAGAGCTCAACGGTATCACCAGTTGTTTACAATCACATGA 4266 0.403 MKRSRDDVYMSSQLKRPMVSSRGEPSGQPQVTIGNAGQKLTTDDALQYLKAVKDMFHDKKEKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRNLILGFNTFLPKGYEITLPLEDEQPQQKKPVEFVEAINFVGKIKSRFQGDDRVYKSFLDILNMYRKETKTISEVYLEVAALFRDHEDLLEEFTHFLPDNSVSASTHYTSARNSILRDKSSAMPTIRPMHVDKKERTTASHGERDLSVDHPDQELDKSLVRADKDQKRRAEKEKDRREERDRRERERDDRDYDVDCNRDSLSHKRKSGRRTDDSGAEPFHEEDENFDLRPMSSTCEDKSSLKSMCSQVVAFLEKVKEKLRTPEVYQEFLKCLHIYSREIITRQELQSLVGDLLGKFPDLMEGFNEFLAQCEKNEGFLAGVMNKKSLRNEGHGLKALKVEERDRDRDRDKVEGVKERDRECRERDKSTAAAANKDVFVPKMSPYATKDKYLAKPINELDLSNCEQCTPSYRLLPKNYPIQIPSQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQFEDILFRCEDDRYELDMLIESVNVAIKRVEELLEKINTNIIKGDSPIRIEEHFTASNLRLIERLYGDHGLDAMDWLRKDAPRFLPVILNRLRQKHVECVRMSVACKPEWAKVHAANHHKSLDHRSFYFKQQDKKSLSNKALLTEIKEISEKKWKDDVLLAIAAGNRRPLLPNLEFEYPDPEIHEDLYQLIKYSCGELCTTEQMDEVLKIWTTFLEPMLGVPSRPQSCEDTDDIVKAKSNSSRSGTSNDSNGNDSHGFGATPNNLNTNENRDESILLAQSNSFKEWLANGDSGVKESSHLDSDRTSYKIETLGSNTQQGKIHMIASIPDEVSRINKQDHPIEKLASANISVASGMEQNGRTNIDNTSGLTSPPSGPGNVSGEGGLGLPPSKPADSTKPVTSSNGVITEGTKVHRPKDESVGHFKSDREEGELSPNGDFEEDNFAVYREAGLEGVIEGKDSSTSRQYQSRHGEEVCGEAGGRNDLDDEGEESPHRSSEDSDHALENGDVSGSESADGDDFTREEKEGRDQEHNNKAESEGEAEEMADGNDVEGDSSLVPISEHFLLTAKPLAKYVMPVLHEKEHYRVFYGNDSFYVLFRLHQKLYERIRSAKVNSSSDERKWGTTNDTSSTEQYGRFLNSLYDFLDGSSDNTKFEDDCRAIVGTQSYVLFTIDKLIYKLVKHLQAVADDEMDNKLLQLYAHEKSRKPERFFDTVYHDNARILLHDDNIYRVECSPAPTRLSIQLMDYGRDKPEVTAVSIDPKFSAYLHNDFLAVVPDQNKKSGIFLNRNKRKYATVDEFTSQAMDGVDVFNGLECKIACSSSKVSYVLDTEDFLIRTRSRRRTLHHNNSFHEKAKPSEKCSSRAQRYHQLFTIT* 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3492 1421 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 942 956 - -
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 1002 1102 - -
Ahy3g3492 1421 SUPERFAMILY PAH2 domain 36 107 IPR036600 GO:0006355
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 14 36 - -
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 434 458 - -
Ahy3g3492 1421 SUPERFAMILY PAH2 domain 121 193 IPR036600 GO:0006355
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 1 36 - -
Ahy3g3492 1421 PANTHER SIN3B-RELATED 1 1391 IPR039774 GO:0003714
Ahy3g3492 1421 Pfam C-terminal domain of Sin3a protein 1135 1381 IPR031693 -
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 770 816 - -
Ahy3g3492 1421 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Ahy3g3492 1421 SUPERFAMILY PAH2 domain 339 404 IPR036600 GO:0006355
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 222 325 - -
Ahy3g3492 1421 Coils Coil 568 588 - -
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 1011 1053 - -
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 207 327 - -
Ahy3g3492 1421 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Ahy3g3492 1421 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Ahy3g3492 1421 Gene3D Paired amphipathic helix 333 406 IPR036600 GO:0006355
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 786 816 - -
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 905 989 - -
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 905 925 - -
Ahy3g3492 1421 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Ahy3g3492 1421 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Ahy3g3492 1421 Pfam Paired amphipathic helix repeat 148 191 IPR003822 GO:0006355
Ahy3g3492 1421 Coils Coil 254 283 - -
Ahy3g3492 1421 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1391 - -
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 1062 1089 - -
Ahy3g3492 1421 Pfam Sin3 family co-repressor 497 588 IPR013194 -
Ahy3g3492 1421 Gene3D Paired amphipathic helix 122 195 IPR036600 GO:0006355
Ahy3g3492 1421 MobiDBLite consensus disorder prediction 958 980 - -
Ahy3g3492 1421 SMART hdac_interact2seq4b 495 595 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3492 Ahy-Chr3 133743561 133752641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3492 15 120 WRKY Transcription Factor Family AT4G12020 55.660 2.13e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy3g3492 Sin3a_C 3.40E-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3492 K11644 - gmx:100781798 1970.67