Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3454 ATGAACCCTGCAGTGATTTTCATCATAGTGATCTTAGCTATTGTGTTCTTGATCTCTGGTATCATTCAATTGGTTGTTAGATTCCTCATGAGGCAAAGGTCCTCTTCTTCATCAATTATACAATCAAATAGGTTCCCTGACATGTCTGAACCTGATGCATACCAGAGACAGTTACAGCAACTCTTCCATCTCCATGATTCAGGCTTGGATCAGGCCTTCATAGATGCTCTCCCAGTTTTCTACTACAGAGAGATCATAGGTTTGAAGGAACCATTTGATTGCGCAGTTTGCTTATGTCAATTCTCAGAACAAGACATGCTGAGATTGCTTCCACTTTGTAACCATGCTTTTCACATTGACTGCATAGACACATGGCTCATGTCTAATTCAACTTGTCCCCTTTGTAGAGGGAGCCTCTATGATCCAGGGTTTGCATTTGACAACCCAGTTTATGAATTTGAGGGTCCAATAAGGGAAGATGGGGTTTCAGGGAGTGGTGTTGGTGTTGGTGAGGCTGGTTCTGCCAATAACAAACATGGAGAAAGTCACATAATGAGTGGGAAAAGGGTGTTTTCTGTTAGGCTTGGGAAATTCAGGAGCTCAAATAATGGTGAAGGCGTGGTCATGGGAAGAGGTGAAGGAGAGAGTAGTAGTAGCACAAGTAATTTTGATGTGAGGAGGTGCTTCTCAATGGGGTCTTTTCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTATGCCCTGACACCAGTGGCAGTATGAGAAAATTGAAAGGAAGATTAGCTCCACAATATGGAAATTCTACTTCCATTGATGGGGATATTGAGGGGGAAAAAATCAACATTGCTAGAAAAGGTGAGAGCTTTTCTGTTTCAAAGATTTGGCTATGGTCTAGGAAGGATAAGGTATCAAATTCCTCACCAGAAACTCATTTGGGTAATTCTCATGTCACCGCAACTTTGCATGGATGA 975 0.4205 MNPAVIFIIVILAIVFLISGIIQLVVRFLMRQRSSSSSIIQSNRFPDMSEPDAYQRQLQQLFHLHDSGLDQAFIDALPVFYYREIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLMSNSTCPLCRGSLYDPGFAFDNPVYEFEGPIREDGVSGSGVGVGEAGSANNKHGESHIMSGKRVFSVRLGKFRSSNNGEGVVMGRGEGESSSSTSNFDVRRCFSMGSFQYVVADSDLQVALCPDTSGSMRKLKGRLAPQYGNSTSIDGDIEGEKINIARKGESFSVSKIWLWSRKDKVSNSSPETHLGNSHVTATLHG* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3454 324 SMART ring_2 94 135 IPR001841 -
Ahy3g3454 324 MobiDBLite consensus disorder prediction 304 324 - -
Ahy3g3454 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 141 IPR013083 -
Ahy3g3454 324 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Ahy3g3454 324 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 317 - -
Ahy3g3454 324 Pfam Ring finger domain 93 136 IPR001841 -
Ahy3g3454 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 317 - -
Ahy3g3454 324 CDD RING-H2_PA-TM-RING 93 136 - -
Ahy3g3454 324 SUPERFAMILY RING/U-box 73 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3454 Ahy-Chr3 133368718 133370971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3454 20 308 C3H Transcription Factor Family AT2G18650 37.855 8.04e-58 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3454 - - gmx:100818135 432.565