Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3415 ATGTCATCAAGTAGAACACTAGTGAGGCATGTGTTTGATGTTCCTGAAGAGATATGTTACGTGCAATGTGGATTGTGTTCATCCATTTTAGTGGTGTGTGTGCCATGCACCAGCATGTCAATGGCGGTTCTCAGTGTCAGATGCGGCCACTGCTCAACCATTCTCTCTGTCAACATGATCAAACCTTCCTTTCTTCCTTCTCTGCTAAATATTGAGGATGGCAACAAGATTAGCACTTTGAACGCTCATAATAATTATAATGATTGTGAGGAAGCCAATAATAATGTAACTACTCCATTCACAACTGATTCTGCTCCCAATAAACCGCCAGAAAAGAAACAGCGAACACCGTCGGCTTATAACTGTTTCATCAAAGAAGAGATTAAGAGGCTTAAAGCTGAAAACCCTGAAATGGCTCACAAGGAAGCTTTCAGTACTGCTGCAAAAAATTGGGCCAATTTTCCCCCATCTGAGTATAGAAGAGGAGATGATGAAATTGACGAAGAGCGCTCTACCCACACACCCCAACTTGCTAATAATAATAAGGTGAATATTGAAGAAGGTGAAGATCGACGTGGAAGAAAGAATCTAGAGAATTCTATGATAAATGCACCGTTCAAGTGA 624 0.4103 MSSSRTLVRHVFDVPEEICYVQCGLCSSILVVCVPCTSMSMAVLSVRCGHCSTILSVNMIKPSFLPSLLNIEDGNKISTLNAHNNYNDCEEANNNVTTPFTTDSAPNKPPEKKQRTPSAYNCFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPSEYRRGDDEIDEERSTHTPQLANNNKVNIEEGEDRRGRKNLENSMINAPFK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3415 207 MobiDBLite consensus disorder prediction 155 207 - -
Ahy3g3415 207 MobiDBLite consensus disorder prediction 93 107 - -
Ahy3g3415 207 PANTHER PROTEIN YABBY 6-RELATED 1 170 IPR006780 GO:0007275
Ahy3g3415 207 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 113 181 IPR009071 -
Ahy3g3415 207 MobiDBLite consensus disorder prediction 93 116 - -
Ahy3g3415 207 Gene3D High mobility group box domain 98 182 IPR036910 -
Ahy3g3415 207 SUPERFAMILY HMG-box 102 175 IPR036910 -
Ahy3g3415 207 Pfam YABBY protein 15 156 IPR006780 GO:0007275
Ahy3g3415 207 PANTHER AXIAL REGULATOR YABBY 4 1 170 - -
Ahy3g3415 207 MobiDBLite consensus disorder prediction 158 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3415 Ahy-Chr3 132936993 132939133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3415 6 162 C2C2-YABBY Transcription Factor Family AT1G23420 49.153 5.46e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ahy3g3415 YABBY 4.70E-47 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3415 K25796 - gmx:100804172 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1406 15 24674623 24677919 Ahy3g3415 3 132936993 132939133 hybridization
Ahy5g1224 5 32961741 32964218 Ahy3g3415 3 132936993 132939133 PCT
Ahy3g3415 3 132936993 132939133 Ahy5g1224 5 32961741 32964218 PCT