Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3401 ATGGAGGACGAAATGTACGGAGTCCCGCCGTCGTCGACGACGGTGTACTCAGACAGGGCGCCGTTGACACCGGACAACCTAATATTCCCGGTTGAGTACCACAGCTTCCTGATGTCCACCGGCGCTCGGATTCCTATGTTCGGATCCGACGAGCTTCTCTCGGCTGCAGCCTCCGGCGTAACGGCCATCACAGAAGCGGAACCCTCTTCCAACATCGTCGTTCCCGAAATCCTTCAGCGTCACCACTCCCACGACGCCGCTTCTTCCTCTCACATGAAGGCCAAAATCGCTTCTCACCCTTACTACCCTCGCCTCCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAGATAGCAAGTTTGTTAGAGGAGATACAGCGAGAAAACGACCTTTGCAAGGGGGACGTGAATTCCACGTGCATAGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACATACTGTGACATGCTGGTGAAGTATAAGTGCGATCTGACTCGGCCTTTCGAGGAAGCTAGCAGCTTCCTCAACAAGATCGAAACGCAGCTCAGCAATCTCTGCTGCACAGGTGCTTCCGCTCCAGCATCACTTTCCGATGATGATGGGGGTGCATCATCCGAGGAATATTTAAGTGGTGGTGGTGGTGGAGATGCTGATATTCAAGATGGGCAATCACAATCACAATCACGGGTTGAAGATCGTGATCTTAAGGATAAGCTGTTACGCAAGTTTGGTAGTCACATTAGTTCTTTGAAATTTGAGTTCTCAAAGAAGAAAAAAAGGGGCAAGCTACCCAAAGACGCTAGGCAAACTCTCCTTCAGTGGTGGAACATACACTACAAATGGCCCTATCCAACGGAAGCTGATAAGGTTGCACTGGCGAAGTCGACCGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCATTGGAAACCCTCGGAGAACATGCAGTTTAATTTCTACGAAGGATGA 999 0.5045 MEDEMYGVPPSSTTVYSDRAPLTPDNLIFPVEYHSFLMSTGARIPMFGSDELLSAAASGVTAITEAEPSSNIVVPEILQRHHSHDAASSSHMKAKIASHPYYPRLLQAYIDCQKVGAPPEIASLLEEIQRENDLCKGDVNSTCIGADPELDEFMETYCDMLVKYKCDLTRPFEEASSFLNKIETQLSNLCCTGASAPASLSDDDGGASSEEYLSGGGGGDADIQDGQSQSQSRVEDRDLKDKLLRKFGSHISSLKFEFSKKKKRGKLPKDARQTLLQWWNIHYKWPYPTEADKVALAKSTGLDQKQINNWFINQRKRHWKPSENMQFNFYEG* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3401 332 MobiDBLite consensus disorder prediction 198 237 - -
Ahy3g3401 332 SMART HOX_1 260 325 IPR001356 GO:0003677
Ahy3g3401 332 Gene3D - 256 328 - -
Ahy3g3401 332 SUPERFAMILY Homeodomain-like 259 327 IPR009057 -
Ahy3g3401 332 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 329 - -
Ahy3g3401 332 Pfam KNOX2 domain 143 190 IPR005541 GO:0003677|GO:0005634
Ahy3g3401 332 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Ahy3g3401 332 SMART ELK_2 238 259 IPR005539 GO:0003677
Ahy3g3401 332 Pfam Homeobox KN domain 278 317 IPR008422 GO:0003677|GO:0006355
Ahy3g3401 332 ProSiteProfiles 'Homeobox' domain profile. 258 321 IPR001356 GO:0003677
Ahy3g3401 332 Pfam KNOX1 domain 92 133 IPR005540 GO:0003677|GO:0005634
Ahy3g3401 332 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 329 - -
Ahy3g3401 332 ProSiteProfiles ELK domain profile. 238 258 IPR005539 GO:0003677
Ahy3g3401 332 Pfam ELK domain 238 259 IPR005539 GO:0003677
Ahy3g3401 332 ProSitePatterns 'Homeobox' domain signature. 296 319 IPR017970 GO:0000981|GO:0006355
Ahy3g3401 332 CDD homeodomain 270 322 IPR001356 GO:0003677
Ahy3g3401 332 SMART KNOX2_2 140 191 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3401 Ahy-Chr3 132742420 132750071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3401 3 327 Homeobox Transcription Factor Family AT1G23380 61.862 8.06e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy3g3401 KNOX2 3.10E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3401 - - adu:107481351 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1385 15 23691355 23701229 Ahy3g3401 3 132742420 132750071 hybridization
Ahy5g1245 5 33832643 33842473 Ahy3g3401 3 132742420 132750071 PCT
Ahy3g3401 3 132742420 132750071 Ahy5g1245 5 33832643 33842473 PCT