Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3399 ATGGATTCAGCACCCTTTGTGGTTGTCCTCCTTCTCTTGTTCCTCTCTTGCTTATCAACTCCTTCGCTCTCGGACCCCAGAGCCACAAGGGCGGCCTTGCTCTGCACCAACAGGACCGAACCTGCTCCTTCCCGTCAACTCTTCGTATCAAACTTCCTTGCTGCCATGGACGCACTTACCCCTCTCATCTCAACTAAAAGGTACGGAGCAGTTATCAACGGGACTCGCAACTTAACGGTCTACGCCTTCGGCCAGTGCATGAACGATCTGTCTCAGCAAGACTGCAACATGTGCTTCGCCCAGTGCAAGACACAGATCCTCACCTGCCTTCCCTTCCAGAAAGGGACACGTGGCGGCTCTCTCTTCTTCGATGGCTGCTACCTCAGGTACGATGATTACAACTTCTTCAACGAGAGCGTCACCGATCGAGACACCTCGGTATGTAACGGCACCAGTAACAGAAACGGCGTCGTTTACAAGCGCAATGCTTTGGAGTTGGTGAGCAACTTGAGTCATCTGGCGCCCAAGAACGGCGGCTTCTTCGTTGGCTCATTCAGCCGCAAGAATGTGAGTGTTTATGGATTGGCTCAGTGCTGGAAATTTGTTAATGCAACTTCCTGTAAGAGCTGTTTGGCTGATGCTGTAACTAGAATCGATTCGTGTCCTCCCAAAGAAGAAGGGAGGGCGATGAATACTGGTTGTTACATGAGGTATTCCTCACAGAAGTTTTATTACAATTCAACCACTGTTGCTTCTTCTTCTGGGAATCATGGACGGCGCAAGCTAGCTATAATTCTGGCTGCATCTTGTGCTGCCCTGGCTCTTGTTCTGGCTGCTGCAACATTTGTTTACTTTGCAAGGAAGAATCTACTCAAGAGAAGAAGAGATAGGCGACAGTTTGGTGCACTGTTGGACAGAGTGAACCGGTCCAAGCTAAATATGGCATATGAAATCCTTGAAAAAGCTACAAATTACTTCAATGATGCAAATAAACTAGGACAAGGTGCATCAGGCACAGTTTATAAAGGAGTTCTGCCTGATGGAAATGTTGTGGCCATAAAAAGGCTTAGCTTTAACACAACACAATGGGCAGATCTTTTCTTCAATGAGGTCAATTTGATAAGTGGTGTTCATCACAAGAATCTTGTAAAGCTTTTGGGATGCAGCATTACAGGACCCGAAAGCCTTTTGGTTTATGAATATGTGCCTAACCAGAGTCTCCATGATCACTTTTCAGCTAGGAGGATTTCGCAGCCATTGACTTGGGAAGTGAGGTACAAGATCATACTAGGAATTGCTGAGGGCCTGGCCTATCTTCATGAGGAGTCTCATGTTAGAATCATTCATAGAGACATAAAATTAAGCAACATTCTGCTAGACAATGACTTCACACCGAAGATTGTGGATTTTGGTCTTGCTAGATTGTTTCCTGAAGATAAGTCTCACCTTAGCACAGCCATTGCTGGCACACTCGGTTATATGGCTCCAGAATATATAGTTTGTGGGAAGTTGACTGCAAAAGCGGATGTATTTAGTTTTGGAGTTCTAGTTGTTGAAATTGTATCTGGCAGAAAAAACAGCTCCTTCATCGCCAATTCATCCTCTATCCTACAAACGTTGTGGAGCCTTTTCGGATCAAATAGGCTAGCCGAAATCGTTGATCCAGCCCTCGAGGGTAACTTCCCTTCAGAGGAAGCATGCAGACTACTGCAGATAGGGTTGCTTTGCGCGCAAGCATCTGCAGAGCTGCGACCATCGATGTCAGCAGTTGTTCAAATGATTAACAATAGCCACGAAATTCCTCAGCCGACGCAACCGCCGTTTCTTAATTCTAGTTCTTCAGAACTCAGCAAATCAAGTTTGCCTGGATATAATTTTCAGCCAGGATCCATGACTCAGTCTTCAGGGGACAGCATGACAGAGAGTCTTATTGAGCCTAGATGA 1944 0.4609 MDSAPFVVVLLLLFLSCLSTPSLSDPRATRAALLCTNRTEPAPSRQLFVSNFLAAMDALTPLISTKRYGAVINGTRNLTVYAFGQCMNDLSQQDCNMCFAQCKTQILTCLPFQKGTRGGSLFFDGCYLRYDDYNFFNESVTDRDTSVCNGTSNRNGVVYKRNALELVSNLSHLAPKNGGFFVGSFSRKNVSVYGLAQCWKFVNATSCKSCLADAVTRIDSCPPKEEGRAMNTGCYMRYSSQKFYYNSTTVASSSGNHGRRKLAIILAASCAALALVLAAATFVYFARKNLLKRRRDRRQFGALLDRVNRSKLNMAYEILEKATNYFNDANKLGQGASGTVYKGVLPDGNVVAIKRLSFNTTQWADLFFNEVNLISGVHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDHFSARRISQPLTWEVRYKIILGIAEGLAYLHEESHVRIIHRDIKLSNILLDNDFTPKIVDFGLARLFPEDKSHLSTAIAGTLGYMAPEYIVCGKLTAKADVFSFGVLVVEIVSGRKNSSFIANSSSILQTLWSLFGSNRLAEIVDPALEGNFPSEEACRLLQIGLLCAQASAELRPSMSAVVQMINNSHEIPQPTQPPFLNSSSSELSKSSLPGYNFQPGSMTQSSGDSMTESLIEPR* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3399 647 CDD STKc_IRAK 332 596 - -
Ahy3g3399 647 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Ahy3g3399 647 Pfam Salt stress response/antifungal 42 133 IPR002902 -
Ahy3g3399 647 Pfam Salt stress response/antifungal 148 240 IPR002902 -
Ahy3g3399 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Ahy3g3399 647 ProSiteProfiles Gnk2-homologous domain profile. 141 243 IPR002902 -
Ahy3g3399 647 MobiDBLite consensus disorder prediction 601 641 - -
Ahy3g3399 647 ProSiteProfiles Gnk2-homologous domain profile. 29 135 IPR002902 -
Ahy3g3399 647 Pfam Protein kinase domain 327 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g3399 647 SMART serkin_6 326 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g3399 647 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 634 - -
Ahy3g3399 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 19 634 - -
Ahy3g3399 647 Gene3D Phosphorylase Kinase; domain 1 287 401 - -
Ahy3g3399 647 ProSiteProfiles Protein kinase domain profile. 326 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g3399 647 Gene3D - 141 243 IPR038408 -
Ahy3g3399 647 Gene3D - 30 135 IPR038408 -
Ahy3g3399 647 SUPERFAMILY Protein kinase-like (PK-like) 314 627 IPR011009 -
Ahy3g3399 647 MobiDBLite consensus disorder prediction 601 647 - -
Ahy3g3399 647 Gene3D Transferase(Phosphotransferase) domain 1 402 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3399 Ahy-Chr3 132732043 132735173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3399 20 491 Receptor kinase-like Gene Family AT1G70530 59.283 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ahy3g3399 Pkinase 7.00E-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3399 - - gmx:100305402 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1379 15 23587755 23591454 Ahy3g3399 3 132732043 132735173 hybridization
Ahy5g1251 5 33926090 33929931 Ahy3g3399 3 132732043 132735173 PCT
Ahy3g3399 3 132732043 132735173 Ahy5g1251 5 33926090 33929931 PCT