Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3389 ACCATGGCTTCTTCTCTCAATAATCTTCTTTGTCTTCTCTTCTCTCTTATGGCAACTTCATCTTCTATCAGAGTCTCTGCATTTCGTGTTTCAATGAAAACAACATACATGGACCCGCTAAGTTGCTCTGTAGAGGCTGCCAATACATGCACTGCCTCACTCTACCACATAACTCATGATGATTACAGCCTTGAAGAAATTGCATTTTATTACTCTGTTAACTCTTCACAAATCAAGCCTATTAAGTATGGAACAAGGCAAGATTACCTCATAACAGTTCCTTGTTCTTGCAAGAACACACAAAACCTCAGCGGGTATTTCTATCATACAACCTACAAAAATGTGAAGCATGGTGACATCTTTGTGGACATATCAGCTTCTGTTTACAGTGGACAAGCCATGCTGATCACCCAAAGTTTAATTCCAGGCGAAGATCTAGAAATAGACATTCCATGTGGGTGTTCCGAGGATGAGGGTCAAAGGGTTGTCACATATACAGTGCAGCAGAATGATACACCAGAAACAATTTCCCTTTTGCTTAATGCTACCCTGCCTGCCTTCCTGAGAATGAACAAGATTCTAGCTCAGAAACCTGGTTTCATAGATATTGGTTGGGTGCTCTTTGTTCCTTTGGAATTGAATGGGGTTCATGGGGTTCCTCCACAACCCACAGAAAAAACGAAACGGAACTGGCCAATGATAGTTGGTATCGTCGTGGGAGTGCTGTTACTTTCAGTTATCATTATCACCATTCTCATAATTCTTTGGAGAAGGAGAGTCCATCAAATCACCAGAAATGATTCCACAGTTGTCTCTAAAAGATCATTTGTCAACAGAAATATTACCTTGCATAACTCCATCCTTTTCAAAGAATATATGGGAGATGTAATGCAAATTGAATCAGAAAGGCCACTGATATATGGTCTTGAGGAGATAGAAGAGGCTACAAATAACTTTGATGAAGCTCGAAAAATCGGAGTTGGCGGATATGGGAGTGTTTATTTTGGAATCTTAGAGCAGAAGGAGGTTGCTGTGAAAAAGATGAGGTCTAATAAGACTAAGGAATTCTATACGGAACTCAAGGCCTTGTGTAAAATCCATCATATCAACATTGTGGAGCTATTAGGATATGCCAGAGGAGAAGATCACCTCTATTTGGTGTATGAGTATGTTTCAAATGGATCTCTCAGTGAACATATTCATGATCCATTAGAGCAAGGGCACCAACCTCTTTCTTGGAATGCAAGGGTTCATATTGCACTCGATGCAGCAAGAGGTATTGAATACATACATGATCATACAAAAGCTCGATATGTGCATCGCGACATAAAGACTAGCAATATTCTTGTTGATCAGAAGCTCAGAGCTAAGGTAGCAGATTTTGGACTTGCAATGCTGGTGGACAGAAGCAATGATGAAAATTTCATAGCAACAAGGCTTGTTGGAACACCAGGATACCTTCCACCCGAATCTGTGAAGGAGCTTCAGGTGACCCCAAAAACCGATGTGTTTGCATTTGGAGTGGTTCTAGCAGAACTGATAACAGGGAAACGTGCACTGTTTCGGGACAACAACGAAGAAGGCACCAAAATGAAATCACTTATTTCACTTGTACATCAAATATTCCAAGATGCAGAGGCAGAGAATGGTCTAGAAGATGTGATAGATAAGAACCTTGAAGGAAACTATCCCATTGAATACGTGTTGAAGGTAGCAGAGATAGCAGGTCGGTGCTTGCAAGAAGATCCAGTAGAAAGGCCTGAAATGAGGGACTTGGTTGGAGCACTGTCACAGATAGTGATGAACTCCATAGAATGGGAAGCATCACTTGGTGGAAACAGCCAAGTCTTCAGTGGTGTCTTTACTGGAAGATGA 1875 0.4117 TMASSLNNLLCLLFSLMATSSSIRVSAFRVSMKTTYMDPLSCSVEAANTCTASLYHITHDDYSLEEIAFYYSVNSSQIKPIKYGTRQDYLITVPCSCKNTQNLSGYFYHTTYKNVKHGDIFVDISASVYSGQAMLITQSLIPGEDLEIDIPCGCSEDEGQRVVTYTVQQNDTPETISLLLNATLPAFLRMNKILAQKPGFIDIGWVLFVPLELNGVHGVPPQPTEKTKRNWPMIVGIVVGVLLLSVIIITILIILWRRRVHQITRNDSTVVSKRSFVNRNITLHNSILFKEYMGDVMQIESERPLIYGLEEIEEATNNFDEARKIGVGGYGSVYFGILEQKEVAVKKMRSNKTKEFYTELKALCKIHHINIVELLGYARGEDHLYLVYEYVSNGSLSEHIHDPLEQGHQPLSWNARVHIALDAARGIEYIHDHTKARYVHRDIKTSNILVDQKLRAKVADFGLAMLVDRSNDENFIATRLVGTPGYLPPESVKELQVTPKTDVFAFGVVLAELITGKRALFRDNNEEGTKMKSLISLVHQIFQDAEAENGLEDVIDKNLEGNYPIEYVLKVAEIAGRCLQEDPVERPEMRDLVGALSQIVMNSIEWEASLGGNSQVFSGVFTGR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3389 624 Pfam Protein kinase domain 320 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g3389 624 ProSiteProfiles LysM domain profile. 163 209 IPR018392 -
Ahy3g3389 624 SMART serkin_6 319 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g3389 624 SUPERFAMILY LysM domain 163 210 IPR036779 -
Ahy3g3389 624 Gene3D Phosphorylase Kinase; domain 1 297 390 - -
Ahy3g3389 624 ProSiteProfiles Protein kinase domain profile. 319 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g3389 624 Gene3D LysM domain 156 215 IPR036779 -
Ahy3g3389 624 SUPERFAMILY Protein kinase-like (PK-like) 305 600 IPR011009 -
Ahy3g3389 624 Pfam LysM domain 165 210 IPR018392 -
Ahy3g3389 624 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Ahy3g3389 624 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 22 624 IPR044812 GO:0019199|GO:0045087
Ahy3g3389 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Ahy3g3389 624 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 22 624 - -
Ahy3g3389 624 Gene3D Transferase(Phosphotransferase) domain 1 391 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3389 Ahy-Chr3 132647359 132650632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3389 293 624 Receptor kinase-like Gene Family AT1G51940 49.852 7.86e-113 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ahy3g3389 Pkinase 5.70E-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3389 - - gmx:100791718 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1364 15 22951608 22956719 Ahy3g3389 3 132647359 132650632 hybridization
Ahy3g3389 3 132647359 132650632 Ahy15g1364 15 22951608 22956719 PCT