Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3378 ATGGGCGGCGACAACCTCAAGTTCCTCTGCAGCTACGACGGTAAAATCCTCCCCCGCTATCCCGACGGCAAGCTCCGCTACCTGGGCGGCCACACCCGCCTCCTCTCCCTCCCTCGCTCCACTGCCTTCTCCGAGCTGCTTGTGAAGCTGGGAGACCTGTGCGGTTCCCCCGTCACCCACCTCCGCTGCCAACTACCTACCGAGGACCTCGACGCCTTGGTCTCCATCACTTCCGATGAGGATCTCGCTAACCTTCTCGAGGAATACGACCGCGTTTCATCTTCCAAGATCAGGCTCTTCCTTTCCTATTCATCCACTGCCAAAACTACGCCATCCTCCTCTTCCTCTTCTTCTTCCTCCTCCTCGACGTCGTCGTTTCGCGCCCAAATGTGTACCGGAACCAAGAAATCCGCTGTCACTGCGAGAAATTCCGCTTTCCCCTGCTATGGTTACCGTGTCCCGGGAAACGCCGGTGGTGTTGTTTACCTCGTAAACAACTGCAACCACTGGCACTAG 516 0.5756 MGGDNLKFLCSYDGKILPRYPDGKLRYLGGHTRLLSLPRSTAFSELLVKLGDLCGSPVTHLRCQLPTEDLDALVSITSDEDLANLLEEYDRVSSSKIRLFLSYSSTAKTTPSSSSSSSSSSSTSSFRAQMCTGTKKSAVTARNSAFPCYGYRVPGNAGGVVYLVNNCNHWH* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3378 171 PANTHER OS05G0427100 PROTEIN-RELATED 4 137 - -
Ahy3g3378 171 SUPERFAMILY CAD & PB1 domains 22 110 - -
Ahy3g3378 171 Pfam PB1 domain 22 102 IPR000270 GO:0005515
Ahy3g3378 171 SMART PB1_new 20 104 IPR000270 GO:0005515
Ahy3g3378 171 Gene3D - 24 104 - -
Ahy3g3378 171 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 4 137 - -
Ahy3g3378 171 CDD PB1_UP2 9 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3378 Ahy-Chr3 132474186 132475187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3378 4 109 MAP Kinase Kinase Kinase AT3G46920 44.643 1.22e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3378 - - gmx:100786933 176.792