Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3356 ATGCACTCTCACTCCCTCCTTTCAATGGAAACGCTCACCACCTCCTCCTCCATCTACCATCAATCTCTGCCTCCTACTCCTCCTCCTCATTACTACTTCCTCTACGCCAACGGTACCACTGACCTCAAGCCTGAGGGACTCGACGGTACTTCCCAACTGGATCATAACATCATGTCCCAACAACCTTCTTTCTTCATCAACCCAAACCTTCAGCCACCACAACCCCTCCTGCCAAAGCTCGAATATTTCTTTCAAACCGACAGAAATGATGATGATGATTCCTCTTCCCTCACCCAAGATCTGAAAGCGCTTGCTGCTGACGCTGCCTTCCTAGCTTTCTCCTCTGCCAATTCGGTCTCTCAGGTGCTGGATGCTCACTCATCCCGGAACGATGACTTCGCGTTCTCCGCTAGTAAAGGCGGTAACTCCTCCAACTCCAAGAAGGTTGTTGGTGATACATTTGGCCAGCGAACTTCAATATACAGAGGTGTTACCAGACACCGATGGACGGGACGATATGAAGCTCACCTGTGGGATAATAGCTGCCGCCGAGAGGGTCAAGCCAGGAAAGGCCGTCAAGTATATTTGGGTGGATATGACAAGGAAGAAAAGGCCGCAAGAGCCTATGATTTGGCAGCTCTAAAGTACTGGGGCCCCACAGCTACCACTAACTTCCCTGTTTCTAATTATATAAAGGAATTGGAAGAGATGAAAGATGTGGGGAAGCTTGAATTTATTGCATCACTACGAAGGAGAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGGGGTGTTACAAGGTTATTTCCAATATTCGAATTAGCAATTCAACATGTTATTGATGCTCATACATGCCTTTATTTTTTTGGATCCAGCAGGCATCATCAACAAGGTAGATGGCAAGCGAGAATAGGCCGCGTTACAGGGAACAAAGATCTATACCTAGGGACATTTGCAAGTGAAGAGGAAGCGGCGGAGGCATACGATATTGCGGCAATAAAGTTCAGAGGGTTAAATGCAGTAACCAATTTTGAGACGAGTAGGTACAACGTGGAAGCCATAATGAATAATTCTCTTCCCGTTGGCGGGGTAGCCAAACGGTTGAGGCTTTCCCTAGAATCAGAGAAGGAAGAAGCTGCTACTTCTACTACTACTACTCATACTCACCAGCCACCTAAGACCGAGAGTGAGAGTAGCATCATGACATTGTCAACCATTCCGGCTCCTCCTGCACACTTTGATTCTGTGACACCATATTGCTACCAATTTCATTCCCCCGATGCCGTTAACGATGCCATCATGCCAATGTAA 1314 0.4726 MHSHSLLSMETLTTSSSIYHQSLPPTPPPHYYFLYANGTTDLKPEGLDGTSQLDHNIMSQQPSFFINPNLQPPQPLLPKLEYFFQTDRNDDDDSSSLTQDLKALAADAAFLAFSSANSVSQVLDAHSSRNDDFAFSASKGGNSSNSKKVVGDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYIKELEEMKDVGKLEFIASLRRRSSGFSRGASIYRGVTRLFPIFELAIQHVIDAHTCLYFFGSSRHHQQGRWQARIGRVTGNKDLYLGTFASEEEAAEAYDIAAIKFRGLNAVTNFETSRYNVEAIMNNSLPVGGVAKRLRLSLESEKEEAATSTTTTHTHQPPKTESESSIMTLSTIPAPPAHFDSVTPYCYQFHSPDAVNDAIMPM* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3356 437 SUPERFAMILY DNA-binding domain 159 228 IPR016177 GO:0003677
Ahy3g3356 437 SUPERFAMILY DNA-binding domain 289 347 IPR016177 GO:0003677
Ahy3g3356 437 MobiDBLite consensus disorder prediction 384 401 - -
Ahy3g3356 437 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 117 269 - -
Ahy3g3356 437 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 291 391 - -
Ahy3g3356 437 ProSiteProfiles AP2/ERF domain profile. 160 226 IPR001471 GO:0003700|GO:0006355
Ahy3g3356 437 CDD AP2 159 228 IPR001471 GO:0003700|GO:0006355
Ahy3g3356 437 Gene3D AP2/ERF domain 160 228 IPR036955 GO:0003700|GO:0006355
Ahy3g3356 437 Gene3D AP2/ERF domain 289 348 IPR036955 GO:0003700|GO:0006355
Ahy3g3356 437 ProSiteProfiles AP2/ERF domain profile. 288 346 IPR001471 GO:0003700|GO:0006355
Ahy3g3356 437 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 291 391 - -
Ahy3g3356 437 MobiDBLite consensus disorder prediction 374 401 - -
Ahy3g3356 437 SMART rav1_2 160 232 IPR001471 GO:0003700|GO:0006355
Ahy3g3356 437 SMART rav1_2 294 352 IPR001471 GO:0003700|GO:0006355
Ahy3g3356 437 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Ahy3g3356 437 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700|GO:0006355
Ahy3g3356 437 Pfam AP2 domain 294 338 IPR001471 GO:0003700|GO:0006355
Ahy3g3356 437 Pfam AP2 domain 160 218 IPR001471 GO:0003700|GO:0006355
Ahy3g3356 437 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 117 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3356 Ahy-Chr3 132167712 132171240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3356 100 368 AP2-EREBP Transcription Factor Family AT5G57390 64.312 9.57e-115 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ahy3g3356 AP2 7.70E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3356 K09285 - psom:113357587 347.436