Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3351 ATGCGCAACCGTTTTTCTGTGTCCCTATCTCCTCTAACTAGAATCTCCTTCTCTCATCACTCTAAAAGATCAAAGATGTGTGGAGGTTCTATCATCTCAGACTTCGCTGGGGTCAAGCGTGGCCGGAAATTGGTCTCTCAGGACTCATGGTATGATGAGCTGGACCCTTTCTTCGACTTCCTTGGTTTTGACACCGCCGTAGCTGCCGCCACCAACCCCAACAACAAGGTTCAGTCACCACTTCCCGAGATCCCAGGAGATAACAACAACAAAGTGGCAGCATGTGACGAGGTACTAGGAATGGAAAAAATGGTGGTTGGTGGTGCAGAAGATAAGAAGCAGCCCGGGAAGAAACTTAAGAACGTGTACAGGGAATCAGGCGCAGGCCCTGGGAATGGCCGCAGCAAAGGGGCCCGTGTCTGGCTCGGCACTTTCAACACTGCCGAGGAGGCTGCTAGGGCCTACGACGTCGCTGCTATACACATCCGAGGAAACAAAGCCAAGCTCAATTTTCCGAATACTATCAAGGACAACGGCGTCGAAGTCCTTCCATTGGCTAAGAAACTATGCCTTAGCGATCAGACCCAATTTCCCATGTTAACACCTATCTCTGCCACGTTTGACAGTGATGATGGAAGCATGGAGGGATGGGAATCCAACCTGACACAGCAGATGTCGGGTCTTGAATGGCTCCTTGGATTGGAGAATGAACAACCATCCCAAATGGGGGGTGATGTCTTTTCGAACAACATTAACAACAACAATGATAGCACCAAAAACGATAACAACATGGACCTGTGGATGCTAGCTGACGTGGTTATGCCCAACCGTTATGCCCAAACATTTTGCGGACAATAA 858 0.4942 MRNRFSVSLSPLTRISFSHHSKRSKMCGGSIISDFAGVKRGRKLVSQDSWYDELDPFFDFLGFDTAVAAATNPNNKVQSPLPEIPGDNNNKVAACDEVLGMEKMVVGGAEDKKQPGKKLKNVYRESGAGPGNGRSKGARVWLGTFNTAEEAARAYDVAAIHIRGNKAKLNFPNTIKDNGVEVLPLAKKLCLSDQTQFPMLTPISATFDSDDGSMEGWESNLTQQMSGLEWLLGLENEQPSQMGGDVFSNNINNNNDSTKNDNNMDLWMLADVVMPNRYAQTFCGQ* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3351 285 SUPERFAMILY DNA-binding domain 134 173 IPR016177 GO:0003677
Ahy3g3351 285 PANTHER DNA-BINDING DOMAIN 136 258 IPR044808 GO:0003700|GO:0009873
Ahy3g3351 285 SMART rav1_2 112 178 IPR001471 GO:0003700|GO:0006355
Ahy3g3351 285 CDD AP2 134 174 IPR001471 GO:0003700|GO:0006355
Ahy3g3351 285 ProSiteProfiles AP2/ERF domain profile. 105 172 IPR001471 GO:0003700|GO:0006355
Ahy3g3351 285 Gene3D AP2/ERF domain 113 174 IPR036955 GO:0003700|GO:0006355
Ahy3g3351 285 Pfam AP2 domain 131 164 IPR001471 GO:0003700|GO:0006355
Ahy3g3351 285 PANTHER EREBP TRANSCRIPTION FACTOR 136 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3351 Ahy-Chr3 132124538 132126902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3351 26 273 AP2-EREBP Transcription Factor Family AT3G16770 35.439 5.65e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy3g3351 AP2 1.00E-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3351 K09286 - gmx:100817253 168.703